View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8677_low_7 (Length: 244)
Name: NF8677_low_7
Description: NF8677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8677_low_7 |
 | |
|
| [»] scaffold0194 (1 HSPs) |
| | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 33981200 - 33981355
Alignment:
| Q |
72 |
tattaacatagccaataagcattattacaaataaacaggatatattattnnnnnnnnnnnn-tcgaataacattctcattagaacattattattgttgaa |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33981200 |
tattaacatagccaataagcattattacaaataaacaggttatattattaaaaaaaaaaaaatcgaataacattctc-ttagaacattattattgttgaa |
33981298 |
T |
|
| Q |
171 |
aatactatttttcaaaatgcttttatataacctaaaacaaacatgttgtcgaaaaaag |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33981299 |
aatactatttttcaaaatgcttttatataacct-aaacaaacatgttgtcgaaaaaag |
33981355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 8177191 - 8177240
Alignment:
| Q |
7 |
ctgaatccttgaggaggaacatactcccaaatctcaagccaataccacta |
56 |
Q |
| |
|
||||| |||||||||||| || ||||||| ||| |||||||||||||||| |
|
|
| T |
8177191 |
ctgaaaccttgaggaggagcacactcccagatcccaagccaataccacta |
8177240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 18363757 - 18363714
Alignment:
| Q |
13 |
ccttgaggaggaacatactcccaaatctcaagccaataccacta |
56 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
18363757 |
ccttgaggaggagcacactcccaaatctcaagcctataccacta |
18363714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 13061 - 13102
Alignment:
| Q |
13 |
ccttgaggaggaacatactcccaaatctcaagccaataccac |
54 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||| |
|
|
| T |
13061 |
ccttgaggaggagcacactcccagatctcaagccaataccac |
13102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 15792 - 15833
Alignment:
| Q |
13 |
ccttgaggaggaacatactcccaaatctcaagccaataccac |
54 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
15792 |
ccttgaggaggagcatactccaaaatcccaagccaataccac |
15833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 46518695 - 46518646
Alignment:
| Q |
7 |
ctgaatccttgaggaggaacatactcccaaatctcaagccaataccacta |
56 |
Q |
| |
|
||||| |||||||||||| || ||||||| ||| |||||||||||||||| |
|
|
| T |
46518695 |
ctgaaaccttgaggaggagcacactcccagatcccaagccaataccacta |
46518646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 24652924 - 24652888
Alignment:
| Q |
18 |
aggaggaacatactcccaaatctcaagccaataccac |
54 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
24652924 |
aggaggaacacactcccaaatctcaagtcaataccac |
24652888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University