View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8677_low_8 (Length: 241)
Name: NF8677_low_8
Description: NF8677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8677_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 42095119 - 42094893
Alignment:
| Q |
17 |
gtttctttaggaactgtaacttctcttatagttagtg--actaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggta |
114 |
Q |
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| T |
42095119 |
gtttctttaggaactgtaacttctcttatagttagtgtgactaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtg |
42095020 |
T |
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| Q |
115 |
atgctttgacaagtttctttccccttcatgtttttcacttttaactctttcct--------------ttttgaaacattgtgtttgcatcaggcttgcct |
200 |
Q |
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| T |
42095019 |
atgctttgacaagtttctttccccttcatgtttttcacttttaactctttcctttttctgtcctgttttttgaaacattgtgtttgcatcaggcttgcct |
42094920 |
T |
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| Q |
201 |
tgatttgaagctgtatatattttgttg |
227 |
Q |
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| T |
42094919 |
tgatttgaagctgtatatattttgttg |
42094893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 171
Target Start/End: Complemental strand, 48909302 - 48909189
Alignment:
| Q |
55 |
ctaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgctttgacaagtttctttccccttcatgtttttcactt |
154 |
Q |
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| T |
48909302 |
ctaggcttgagttcaaatgttgaagatgatg---gagagtgaggctttgatgagaagatgaccctttgacgggtttctttccccttcagctatttcactt |
48909206 |
T |
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| Q |
155 |
ttaactctttccttttt |
171 |
Q |
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| T |
48909205 |
ttttctatttccttttt |
48909189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 35361100 - 35361044
Alignment:
| Q |
60 |
tttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgct |
119 |
Q |
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| T |
35361100 |
tttgagttcataggttgaagatgatga---agagtgagactttgatgagaaggtgatgct |
35361044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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