View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8677_low_9 (Length: 240)
Name: NF8677_low_9
Description: NF8677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8677_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 9478582 - 9478788
Alignment:
| Q |
1 |
tttacacgaatttgctggtagaaaaagtagggttgttaggaatattattggcctaatagttcaacaaacttttctttactgtaggggcggtattatggat |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |
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| T |
9478582 |
tttacacggatttgctggtagaaaaagtagggttgttaggaataccattggcctaatagttcaacaaacttttctttgccgtagggacggtattatggat |
9478681 |
T |
|
| Q |
101 |
gataggtatagcaaatccattagtacgaaaagagagcataaatctattagtaggtgtggttgtaatgccaaatttcaagtccatattgattttaataata |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
9478682 |
gataggtatagcaaatccattagtagaaaaagagagcataaatctattagtaggtgtgattgtaatgccaaatttcaagtccatattgattttaatagtg |
9478781 |
T |
|
| Q |
201 |
gttgttg |
207 |
Q |
| |
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||||||| |
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| T |
9478782 |
gttgttg |
9478788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 12913447 - 12913666
Alignment:
| Q |
11 |
tttgctggtagaaaaagtagggttgttaggaatattattggcctaatagttcaacaaacttttctttactgtaggggcggtattatggatgataggtata |
110 |
Q |
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||||||||||||| |||| | |||||||||| | | ||||| ||||||||||||||| ||||||| | ||| | || |||| |||||||||||||| |
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| T |
12913447 |
tttgctggtagaagaagtcgaaatgttaggaatgtcaatggccaaatagttcaacaaacctttctttgccatagagaaggaattagggatgataggtata |
12913546 |
T |
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| Q |
111 |
gcaaatccattagtacgaaaagagagcataaatctattagtaggtgtggttgtaatgccaaatttcaagtccatattgattttaataatagttgttggta |
210 |
Q |
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| T |
12913547 |
acaaaactgttattagaaaaagagagcataaacctactagtaggtgtgggtgtcaggccaaattccaagtccatattgactttaaaagtgatcgttggta |
12913646 |
T |
|
| Q |
211 |
tattaaatattttaatgatg |
230 |
Q |
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|||||||| ||| |||||| |
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| T |
12913647 |
cattaaatactttgatgatg |
12913666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 12922648 - 12922428
Alignment:
| Q |
11 |
tttgctggtagaaaaagtagggttgttaggaatattattggcctaatagttcaacaaacttttctttactgtaggggcggtattatggatgataggtata |
110 |
Q |
| |
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||||||||||||| |||| | |||||||||| | | ||||| ||||||||||||||| ||||||| | ||| | || |||| |||||||||||||| |
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| T |
12922648 |
tttgctggtagaagaagtcgaaatgttaggaatgtcaatggccaaatagttcaacaaacctttctttgccatagagaaggaattagggatgataggtata |
12922549 |
T |
|
| Q |
111 |
gcaaatccattagtacgaaaagagagcataaatctattagtaggtgtggttgtaatgccaaatttcaagtccatattgattttaataatagttgttggta |
210 |
Q |
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|||| | ||| || ||| ||||||||||| ||| |||||||||||| ||| | |||||||| |||||||||||||| ||||| | | | ||||||| |
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| T |
12922548 |
tcaaaactgttattagaaaatgagagcataaacctactagtaggtgtgggtgtcaggccaaattccaagtccatattgactttaaaagtgatcgttggta |
12922449 |
T |
|
| Q |
211 |
tattaaatattttaatgatgt |
231 |
Q |
| |
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|||||||| ||| ||||||| |
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| T |
12922448 |
cattaaatactttgatgatgt |
12922428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 235
Target Start/End: Complemental strand, 31778408 - 31778228
Alignment:
| Q |
55 |
aatagttcaacaaacttttctttactgtaggggcggtattatggatgataggtatagcaaatccattagtacgaaaagagagcataaatctattagtagg |
154 |
Q |
| |
|
|||||||| |||||| ||||||| | ||||| || |||| |||||||| |||||||||| | | || || |||||||||||||||| ||| ||||||| |
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| T |
31778408 |
aatagttcgacaaacctttctttgccatagggaaggcattagggatgataagtatagcaaaactaatattaggaaaagagagcataaacctaatagtagg |
31778309 |
T |
|
| Q |
155 |
tgtggttgtaatgccaaatttcaagtccatattgattttaataatagttgttggtatattaaatattttaatgatgtccat |
235 |
Q |
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||| ||||| | || || |||||||| |||||||| ||| | | | |||||||| ||||||||||| |||||| |||| |
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| T |
31778308 |
tgtagttgtcaagcgaagtttcaagttcatattgactttcaaagcgatcgttggtatgttaaatattttgatgatgcccat |
31778228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 7358491 - 7358426
Alignment:
| Q |
127 |
gaaaagagagcataaatctattagtaggtgtggttgtaatgccaaatttcaagtccatattgattt |
192 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||| | || ||| ||||||| ||||||||||| |
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| T |
7358491 |
gaaaagagagcataaacctattagtcggtgtggttgcgaagcaaaaattcaagtacatattgattt |
7358426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 32403594 - 32403659
Alignment:
| Q |
127 |
gaaaagagagcataaatctattagtaggtgtggttgtaatgccaaatttcaagtccatattgattt |
192 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||| | || ||| ||||||| ||||||||||| |
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| T |
32403594 |
gaaaagagagcttaaacctattagtcggtgtggttgcgaagcaaaaattcaagtacatattgattt |
32403659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 17936557 - 17936613
Alignment:
| Q |
55 |
aatagttcaacaaacttttctttactgtaggggcggtattatggatgataggtatag |
111 |
Q |
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||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| |
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| T |
17936557 |
aatagttcaacaaacatttctttatcatagggaaggtattagggatgataggtatag |
17936613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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