View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8678_low_1 (Length: 405)
Name: NF8678_low_1
Description: NF8678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8678_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 2579150 - 2578780
Alignment:
| Q |
18 |
catgtttggaatcacaatgatgttgacgaaactacaatgccactgattttatttatgtttcaaagtgtagcttttctcaaagttagagtgaagtttatgg |
117 |
Q |
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| T |
2579150 |
catgtttggaatcacaatgaagttgacgaaactacaatgccactgattttatttatgtttcaaagtgtagcttttctcaaagttagagtgaagtttatgg |
2579051 |
T |
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| Q |
118 |
tacttattgaattgtaatcttcattacaggaagaagaagagagtgacataagtctgacatgcaaagcagagagcatcatctcacgaacagaagagccctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2579050 |
tacttattgaattgtaatcttcattacaggaagaaga---gagtgacataagtctgacatgcaaagcagagagcatcatctcacgaacagaagagccctt |
2578954 |
T |
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| Q |
218 |
tgatgatgcaactttagtttgtatggccaaattggtagtcctaaactaatttactttatcccataccataaatctgaattctctgcagtttcagtacttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578953 |
tgatgatgcaactttagtttgtatggccaaattggtagtcctaaactaatttactttatcccataccataaatctgaattctctgcagtttcagtacttt |
2578854 |
T |
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| Q |
318 |
tccttatcaaactacttgcttaatgcatttgttccttcctactaggtccagagcatgaagtaaattactatgat |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578853 |
tccttatcaaactacttgcttaatgcatttgttccttcctactaggtccagagcatgaagtaaattactatgat |
2578780 |
T |
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