View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8678_low_2 (Length: 343)
Name: NF8678_low_2
Description: NF8678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8678_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 41620027 - 41620336
Alignment:
| Q |
11 |
agtttggtgttattcaacatgcttcctcctaacacctttctgcaagattttagtgttcctcctaactcattgaaccatgtaacaaatgggtttgagttgg |
110 |
Q |
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| T |
41620027 |
agtttggttttattcaacatgcttcctcctaacacctttctgcaagattttagtgttcct---aactcattgaaccatgtaacaaatgggtttgagttgg |
41620123 |
T |
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| Q |
111 |
aagaatcatcattttcaccttcttctgtcataagctcagatgaagatccccagtatgcagcggatagatattccaatccattcctcagatacataagtga |
210 |
Q |
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| T |
41620124 |
aagaatcatcattttcaccttcttctgtcataagctcagatgaagatccccagtatgcagcggatagatattccaatccattcctcagatacataagtga |
41620223 |
T |
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| Q |
211 |
catcctcatggatgaagaacatgacttggagcgcgaaccttgtatgttgcaggaatgtttaagactcaaagctgctgaaaaatccttctatgatgttctt |
310 |
Q |
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| T |
41620224 |
catcctcatggatgaagaatatgacttggagcgcgaaccttgtatgttgcaggaatgtttaagactcaaagctgctgaaaaatccttctatgatgttctt |
41620323 |
T |
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| Q |
311 |
ggcaataacaatc |
323 |
Q |
| |
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| T |
41620324 |
ggcaataacaatc |
41620336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 41626349 - 41626642
Alignment:
| Q |
23 |
ttcaacatgcttcctcctaacacctttctgcaagattttagtgttcctcctaactcattgaaccatgtaacaaatgggtttgagttggaagaatcatcat |
122 |
Q |
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| T |
41626349 |
ttcaatatgctttctccaaacacctttctgcaagattttagtgttcca---aactcagtaaaccaagtaacaaatgggtttgaattagaagattcaccat |
41626445 |
T |
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| Q |
123 |
tttcaccttcttct---gtcataagctcagatgaagatccccagtatgcagcggatagatattccaatccattcctcagatacataagtgacatcctcat |
219 |
Q |
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| T |
41626446 |
cttcaccttcttcttctggcacaagctcaaatggacaattcttgga---accgacaagatattccaataacatcctaagatacataaatgacatcctcat |
41626542 |
T |
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| Q |
220 |
ggatgaagaacatgacttggagcgcgaaccttgtatgttgcaggaatgtttaagactcaaagctgctgaaaaatccttctatgatgttcttggcaataac |
319 |
Q |
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| T |
41626543 |
ggatgaagaagatgacttggagcaaaaaccttgcatgttgcaggaatgtttaagacttcaggctgctgaaaagtccttctatgatgttcttggccataac |
41626642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 41623388 - 41623681
Alignment:
| Q |
23 |
ttcaacatgcttcctcctaacacctttctgcaagattttagtgttcctcctaactcattgaaccatgtaacaaatgggtttgagttggaagaatcatcat |
122 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||| || ||||| ||| | | |
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| T |
41623388 |
ttcaatatgctttctcctaacacctttctgcaagattttagtgttcca---aactcagtaaaccaagtaacaaatgggtttgaattagaagattcaccgt |
41623484 |
T |
|
| Q |
123 |
tttcaccttcttct---gtcataagctcagatgaagatccccagtatgcagcggatagatattccaatc-cattcctcagatacataagtgacatcctca |
218 |
Q |
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| T |
41623485 |
cttcaccttcttcttctggcacaagctcaaatggagaatccttgga---aacgacaagatattccaataacattc-taagatacataaatgacatcctca |
41623580 |
T |
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| Q |
219 |
tggatgaagaacatgacttggagcgcgaaccttgtatgttgcaggaatgtttaagactcaaagctgctgaaaaatccttctatgatgttcttggcaataa |
318 |
Q |
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| T |
41623581 |
tggatgaagaagatgacctggagcaaaaaccctgcatgttgcaggaatgtttaagacttcaggctgctgaaaagtccttctatgatgttcttggccataa |
41623680 |
T |
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