View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8678_low_5 (Length: 201)
Name: NF8678_low_5
Description: NF8678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8678_low_5 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 30245 - 30429
Alignment:
| Q |
1 |
tttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30245 |
tttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggtttt |
30344 |
T |
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| Q |
101 |
gatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttgggaatgtaacgcttgaacgacctaagtttt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30345 |
gatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttgggaatgttacgcttgaacgacctaagtttt |
30429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 48883443 - 48883259
Alignment:
| Q |
1 |
tttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgccgggtttt |
100 |
Q |
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|||||||||||||||||||||||| || ||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
48883443 |
tttaatcagtcaccaaatcaactcgtacaatcaattcatcaattcgggtcttcaaagcgctttcgattccttcggtgatctcactgttacgcctggtttt |
48883344 |
T |
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| Q |
101 |
gatccttctaagaaagctgttgatgaacattaccaatatgccacggttaagtttgggaatgtaacgcttgaacgacctaagtttt |
185 |
Q |
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|||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
48883343 |
gatccttctaagaaaggtgctgatgaacattaccgttatgctacggttaagtttgggaaggttacgcttgagcgacctaagtttt |
48883259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 53014706 - 53014590
Alignment:
| Q |
1 |
tttaatcagtcaccaaatcaactcctataatcaattcatcacttctggtcttcaatccgcttttgattccttcggtgatctcactgttacgcc-gggttt |
99 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| ||||||| || || || || |||||||| || ||| |
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| T |
53014706 |
tttaatcagtcaccaaatcaattcctataattaattcatcacttctggtcttcaaaatgctttcaattcctttggagagcttacagttacgcctggtttt |
53014607 |
T |
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| Q |
100 |
tgatccttctaagaaag |
116 |
Q |
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||| ||||||| ||||| |
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| T |
53014606 |
tgacccttctacgaaag |
53014590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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