View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8679_high_2 (Length: 746)
Name: NF8679_high_2
Description: NF8679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8679_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Complemental strand, 29209057 - 29208331
Alignment:
| Q |
1 |
cattaattctaaaacaaaacttaatagagcatagaaaattattgaattccaatcaactataacatacacggatacacctcagtgttctccaaagaatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29209057 |
cattaattctaaaacaaaacttaatagagcatagaaaattattgaattccaatcaactataacatacacggatacacctcagtgttctccaaagaatcaa |
29208958 |
T |
|
| Q |
101 |
atacaacatgcaaataaacattggattaattaatgtgaaccatggattatccctcacttaagctaagtggaaatttgaaggaacataataaggattgaca |
200 |
Q |
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| T |
29208957 |
atacaacatgcaaataaacattggattaattaatgtgaaccatggattatccctcacttaagctaagtggaaatttgaaggaacataataaggattgaca |
29208858 |
T |
|
| Q |
201 |
aatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgatgtagcaacagaaattaaattaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208857 |
aatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgatgtagcaacagaaattaaattaaa |
29208758 |
T |
|
| Q |
301 |
tttttcagacagttaccaacctccaaacttcatcttttctcactctttatatagccccctcaattcaacaacggttacatagttacacatttattccact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208757 |
tttttcagacagttaccaacctccaaacttcatcttttctcactctttatatagccccctcaattcaacaacggttacatagttacacatttattccact |
29208658 |
T |
|
| Q |
401 |
taaacatggagagagcaaacactaaatctactttgaaggttggactagtgattaattttttataatgtagttttgttctacttcctcttagttaattaat |
500 |
Q |
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| T |
29208657 |
taaacatggagagagcaaacactaaatctactttgaaggttggactagtgattaattttttataatgtagttttgttctacttcctcttagttaattaat |
29208558 |
T |
|
| Q |
501 |
actatgtcctaattgtttcactttcttttgcaatttccttaattttccatggccaaaagtttgtcaagaacggttcacaatcttcatctcaatggagtag |
600 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29208557 |
actatgtcctaattgtttcactttcttttgcattttccttaattttccatggccaaaagtttgtcaagaacggttcacaatcttcatctcaatggagtag |
29208458 |
T |
|
| Q |
601 |
tactgattctaaaggaatggtgagatacctagannnnnnncagtaccctctaacataatttctaattgcaaaaaatagtttttgttcaaactcagctacg |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29208457 |
tactgattctaaaggaatggtgagatacctagatttttttcagtaccctctaacataattgctaattgcaaaaaatagtttttgttcaaactcagctacg |
29208358 |
T |
|
| Q |
701 |
caacggtgctatatatagcgtcattgt |
727 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
29208357 |
caacagtgctatatatagcgtcattgt |
29208331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 6e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 178 - 444
Target Start/End: Original strand, 38377513 - 38377782
Alignment:
| Q |
178 |
aaggaacataataaggattgacaaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgtttgtgat |
277 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38377513 |
aaggaacataata-ggattgataaatatatgattgagaaggaaatttaatcagaaagtttggtgcaagagagcatgcaaatcctagagcatgt---tgat |
38377608 |
T |
|
| Q |
278 |
gtagcaacagaaattaa--attaaatttttcagacagttaccaacctccaaacttcatcttttctcactc--tttatatagccccctcaattcaacaacg |
373 |
Q |
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||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||| ||||| |||| |
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| T |
38377609 |
gtagcaacagaaattaaatattgaacctttcagacagttaccaacctccaaacttcatattttctcactctatatatatagtcccct-tgttcaataacg |
38377707 |
T |
|
| Q |
374 |
----gttacatagttacacatttattccacttaaacatggagagagcaaacactaaatctactttgaaggttgga |
444 |
Q |
| |
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| | ||||||||||||| | |||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
38377708 |
actagctgcatagttacacatcaagtccacttaaacatggagagaccaaacactgaatctgttttgaaggttgga |
38377782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 482 - 633
Target Start/End: Original strand, 38378088 - 38378240
Alignment:
| Q |
482 |
ttcctcttagttaattaatactatgtcctaattgtttcactttct--tttgcaatttccttaattttccatggccaaaagtttgtcaagaacggttcaca |
579 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||| | |||| |||||| |||||||||||||| || ||||||||||||||||| |||||| |
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| T |
38378088 |
ttcctcttggttaattaatactaattcctaattgtttc-cattctactttgcattttccttaattttctgcggtgaaaagtttgtcaagaacacttcaca |
38378186 |
T |
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| Q |
580 |
atcttcatctcaatggagtagtactgattctaaaggaatggtgagatacctaga |
633 |
Q |
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||||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
38378187 |
gtcttcatctcattggagtattattgattctaaaggaatggtgagatacctaga |
38378240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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