View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8679_high_5 (Length: 379)
Name: NF8679_high_5
Description: NF8679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8679_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 362
Target Start/End: Complemental strand, 34567038 - 34566685
Alignment:
| Q |
9 |
tggtgttaaaggaacatttaatagtgtacataataaattgtttggtgttattataaaaatatcattttatgtttgcatgctcataatagaggctaatttt |
108 |
Q |
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| T |
34567038 |
tggtgttaaaggaacatttaatagtgtacataataaattgtttggtgttattataaaaatatcattttatgtttgcatgctcataatagaggctaatttt |
34566939 |
T |
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| Q |
109 |
tgtatattatcagtgtgaaaatttacaatgccacaaatcacaactacttttatgtaattttaaaagtagttatggttagtatcaatcatttttattaata |
208 |
Q |
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| T |
34566938 |
tgtatattatcagtgtgaaaatttacaatgccacaaatcacaactacttttatgtaattttaaaagtagttatagttagtatcaatcatttttattaata |
34566839 |
T |
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| Q |
209 |
tgttagttttgattgatggatgatgcgagaatttttagactaacttctaatataaatggtggaatagatgattagatacatatatctatctatgnnnnnn |
308 |
Q |
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| T |
34566838 |
tgttagttttgattgatggatgatgcgagaatttttagactaacttctaatataaatggtggaatagatgattagatacatatatctatctttttttttt |
34566739 |
T |
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| Q |
309 |
nnnnnnnnngagagaatatatctatctatgttgtgttgtgcaattatttaccct |
362 |
Q |
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| T |
34566738 |
tttttttttgagagaatatatctatctatgttgtgttgtgcaattatttaccct |
34566685 |
T |
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