View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8679_low_3 (Length: 708)
Name: NF8679_low_3
Description: NF8679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8679_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 20 - 691
Target Start/End: Complemental strand, 36704595 - 36703935
Alignment:
| Q |
20 |
acactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaaggannnnnnnatctga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
36704595 |
acactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaatgatttttt-atctga |
36704497 |
T |
|
| Q |
120 |
tgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgattttata |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704496 |
tgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgattttata |
36704397 |
T |
|
| Q |
220 |
gcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttactaccacgatatatttattatattgtacttca |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
36704396 |
gcgggtgacaatgctaaacaagtcgtttatgatcccataatagcttttttcaactctcattgattttactaccaagatatatttattatattgtactaca |
36704297 |
T |
|
| Q |
320 |
aataatgtattgtagcatataggagtagttttttcatttagttgagattcattcgagtgnnnnnnnnctcaactgagtatgttagatttccatcaaaatt |
419 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36704296 |
aataatgtattgtagtatataggagtagttttttcatttagttgagattcattcgagtgttttttttctcaactgagtatgttagatttccatcaaaatt |
36704197 |
T |
|
| Q |
420 |
aaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaaagttgtcttgttttttcaacttagatagatcggttgaatttctccattt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
36704196 |
aaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaaagttgtcttgttttttcaacttagatatatcggtcgaatttctccattt |
36704097 |
T |
|
| Q |
520 |
ttcactaacctcacactttcattgcggtttactatttttaaacaaccatta-ttttgtgttattcttacatgagataataagcgaaagaagttnnnnnnn |
618 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704096 |
ttcactaacctcacactttcattgcggtttactatttttaaacaaccattatttttgtgttattcttacatgagataataagcgaaagaagtt------- |
36704004 |
T |
|
| Q |
619 |
nnnnnnnnnnnncatacatttgatagtgcaaattcatggtactatttgataacaaaactgaatgcacgtgatg |
691 |
Q |
| |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36704003 |
---aaaaaaaaacat-catttgatagtgcaaattcatagtactatttgataacaaaactgaatgcacgtgatg |
36703935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 36711745 - 36711475
Alignment:
| Q |
20 |
acactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaaggannnnnnnatctga |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| |||||| | ||||||||||| |||||||| ||||||||||||| || |||||| |
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| T |
36711745 |
acactatggacaaagggttcctccaacttatgacgtgaccaaaatccctagtgaattccccctttttctcagctatggagggaaagatactct-atctga |
36711647 |
T |
|
| Q |
120 |
tgtacaagatgtgaaggttttgctcaatgatctcagtgat---caagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgatttt |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| | || || ||||||| ||| || ||||||||||| |||||||||||||||||| ||||||| |
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| T |
36711646 |
tgtacaagatgtgaaggttttgttcaatgaactcaataatgaccatgatgctagcaaccgtgtggtattgtttaaggatgattatgcacatcttgatttt |
36711547 |
T |
|
| Q |
217 |
atagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttac |
288 |
Q |
| |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36711546 |
atattgggtgataatgctaaacaagtcgtttatgatcccatgatagcttttttcaacgctcattgattttac |
36711475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 114 - 272
Target Start/End: Original strand, 36664788 - 36664946
Alignment:
| Q |
114 |
atctgatgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgat |
213 |
Q |
| |
|
|||||| ||||| |||||||| ||||||| ||||| |||| ||||| ||| ||||||||| ||||| | ||| || ||| ||||||||||| ||| |
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| T |
36664788 |
atctgacgtacaggatgtgaatcttttgcttaatgacctcaaggatcatgattctaacaagctagtggtgtcgttgaacgataattatgcacatttagat |
36664887 |
T |
|
| Q |
214 |
tttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaa |
272 |
Q |
| |
|
|| || |||| | ||||||||||||| || |||||||||| ||||||||||||||||| |
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|
| T |
36664888 |
ttcattgcggctatcaatgctaaacaactcatttatgatcctatgatagcttttttcaa |
36664946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 36677393 - 36677311
Alignment:
| Q |
178 |
gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
260 |
Q |
| |
|
||||| ||||| |||||| |||||||||||| ||||| || |||| || ||||||||||||||||||||||||||| ||||| |
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| T |
36677393 |
gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36677311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 36687475 - 36687393
Alignment:
| Q |
178 |
gtggtattgttcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgat |
260 |
Q |
| |
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||||| ||||| |||||| |||||||||||| ||||| || |||| || ||||||||||||||||||||||||||| ||||| |
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| T |
36687475 |
gtggtgttgttgaaggataattatgcacatgtagatttcattgcggctgtcaatgctaaacaagtcgtttatgatcctatgat |
36687393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 36711398 - 36711358
Alignment:
| Q |
393 |
tgagtatgttagatttccatcaaaattaaaataaaaagaat |
433 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| |
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| T |
36711398 |
tgagtatgttagatttccgtcaaaattaaaacaaaaagaat |
36711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 30905570 - 30905837
Alignment:
| Q |
20 |
acactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagtgaattcccactttttcttggctatggagggaaggannnnnnnatctga |
119 |
Q |
| |
|
||||||||| ||| | ||||||||||| || ||| |||| |||||| | | ||| |||||||||||||| || ||||||||| | || |||||| |
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|
| T |
30905570 |
acactatggtcaacgagttcctccaacttacgacctgaccaaaatcccgaatgatttcccactttttctcggatatggagggcaagatatgct-atctga |
30905668 |
T |
|
| Q |
120 |
tgtacaagatgtgaaggttttgctcaatgatctcagtgatcaagatgctaacaagcgcgtggtattgttcaaggatgattatgcacatgctgattttata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||| | |||||| | ||||||||||||||||||||| | |
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|
| T |
30905669 |
tgtacaagatgtgaaggttttgctcaatgacctccaagatcatgatgctaacaagctcgtggcagcgttcaatcaagattatgcacatgctgattttgtt |
30905768 |
T |
|
| Q |
220 |
gcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgattttac |
288 |
Q |
| |
|
|| | || |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
30905769 |
atggccgtcagtgctaaacaagtggtttatgatcccatgatagcttttttcaacgctcattaattttac |
30905837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 30912203 - 30912288
Alignment:
| Q |
188 |
tcaaggatgattatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaac |
273 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||| || |||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
30912203 |
tcaaggaaaattatgcacatgctgattttattatgagtgtcaccgctaaacaagacgtttatgatcccatgatagattttttcaac |
30912288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 11294987 - 11295073
Alignment:
| Q |
197 |
attatgcacatgctgattttatagcgggtgacaatgctaaacaagtcgtttatgatcccatgatagcttttttcaactctcattgat |
283 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| |||||||||| |||||||||||||||||||| ||||||||| ||||||||| |
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| T |
11294987 |
attatgctcatgctgattttattttaggtgtcaaagctaaacaagacgtttatgatcccatgatagattttttcaatgctcattgat |
11295073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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