View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8679_low_6 (Length: 497)
Name: NF8679_low_6
Description: NF8679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8679_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Complemental strand, 40593771 - 40593294
Alignment:
| Q |
8 |
tggacatcatgttgtgagatcacttggattggatctgtttcattgacattggaacttaggcatggtgttgaaggtgtgcaacttagacatcttgactttg |
107 |
Q |
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| T |
40593771 |
tggacatgatgttgtgagatcacttggattggatctgtttcattgacattggaacttaggcatggtgttgaaggtgtgcaacttagacatcttgactttg |
40593672 |
T |
|
| Q |
108 |
taggatgattattggcatgtgccttgtaatgtggtcttgactcttgagaatt---gaaatgaaggtagataaaatttgcttccaatgttttagctagatt |
204 |
Q |
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| T |
40593671 |
taggatgattattggcatgtgccttgtaatgtggtcttgactcttgagcattattgaaatgaaggtagataaaatttgcttccaatgttttagctagatt |
40593572 |
T |
|
| Q |
205 |
tttgtgtagtgcaaatcattacacattgtttggttttactatttgagacgccgttagacactaaatatgaatatatcttctaggcagaatttgaacattg |
304 |
Q |
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| T |
40593571 |
tttgtgtagtgcaaatcattacacattgtttggttttactatttgagacaccgttagacactaaatatgaatatatcttctaggcagaatttgaacattg |
40593472 |
T |
|
| Q |
305 |
attggtctcttcggagaagtctggctccttccggtagatccaaactcctttgataaattagtaacgctttatttatttactaatacaattattacacgtt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593471 |
attggtctcttcggagaagtctggctccttccggtagatccaaactcctttgataaattagtaacgctttatttatttactaatacaattattacacgtt |
40593372 |
T |
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| Q |
405 |
tagttaattattacacattgtttaggttaagtctattgtggataaataagatagtgcttattttctatcattatatct |
482 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40593371 |
tagttaattattacacattgtttaggttaagtctactgtggataaataagatagtgcttattttctatcattatatct |
40593294 |
T |
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