View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8679_low_8 (Length: 306)

Name: NF8679_low_8
Description: NF8679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8679_low_8
NF8679_low_8
[»] chr4 (5 HSPs)
chr4 (18-164)||(25052653-25052799)
chr4 (36-165)||(21263577-21263706)
chr4 (39-114)||(26861404-26861479)
chr4 (34-113)||(35033863-35033942)
chr4 (37-165)||(46944053-46944181)
[»] chr8 (5 HSPs)
chr8 (39-172)||(29844247-29844380)
chr8 (39-114)||(11354777-11354852)
chr8 (40-115)||(20989717-20989792)
chr8 (39-113)||(42025396-42025470)
chr8 (39-115)||(24944999-24945075)
[»] chr1 (11 HSPs)
chr1 (39-167)||(50139554-50139682)
chr1 (39-165)||(23473768-23473894)
chr1 (39-154)||(40961534-40961649)
chr1 (40-167)||(35306751-35306878)
chr1 (40-105)||(50109055-50109120)
chr1 (18-94)||(16039587-16039663)
chr1 (39-114)||(42117195-42117270)
chr1 (40-113)||(41404078-41404151)
chr1 (36-167)||(15581572-15581703)
chr1 (39-114)||(49741324-49741399)
chr1 (67-167)||(42365919-42366019)
[»] scaffold0011 (1 HSPs)
scaffold0011 (39-172)||(9208-9340)
[»] chr3 (11 HSPs)
chr3 (42-183)||(46651272-46651413)
chr3 (40-165)||(27011191-27011316)
chr3 (36-167)||(42029277-42029408)
chr3 (42-84)||(43140441-43140483)
chr3 (40-164)||(35231810-35231934)
chr3 (39-113)||(25045381-25045455)
chr3 (39-175)||(14567853-14567989)
chr3 (39-110)||(8925777-8925848)
chr3 (39-114)||(30813344-30813419)
chr3 (39-115)||(29765263-29765338)
chr3 (126-183)||(43141012-43141069)
[»] chr7 (3 HSPs)
chr7 (40-167)||(23417208-23417335)
chr7 (40-105)||(29428919-29428984)
chr7 (40-105)||(5925185-5925250)
[»] chr2 (4 HSPs)
chr2 (36-167)||(28219024-28219155)
chr2 (36-113)||(7444723-7444800)
chr2 (34-113)||(28199260-28199339)
chr2 (126-167)||(44246427-44246468)
[»] scaffold0110 (1 HSPs)
scaffold0110 (40-167)||(38565-38687)
[»] chr5 (6 HSPs)
chr5 (34-113)||(30084904-30084983)
chr5 (40-167)||(16597670-16597796)
chr5 (39-114)||(32233012-32233087)
chr5 (36-113)||(7506030-7506107)
chr5 (39-167)||(4943536-4943664)
chr5 (147-183)||(31597057-31597093)
[»] scaffold0127 (1 HSPs)
scaffold0127 (40-113)||(30184-30257)
[»] scaffold0022 (2 HSPs)
scaffold0022 (39-114)||(44164-44239)
scaffold0022 (39-114)||(77885-77960)
[»] chr6 (4 HSPs)
chr6 (39-114)||(7365099-7365174)
chr6 (39-105)||(19694614-19694680)
chr6 (39-112)||(29063579-29063652)
chr6 (39-112)||(29118433-29118506)
[»] scaffold0227 (1 HSPs)
scaffold0227 (36-113)||(237-314)
[»] scaffold0039 (1 HSPs)
scaffold0039 (36-167)||(56922-57053)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 25052653 - 25052799
Alignment:
Q  18 aatggagtggtattttgtcacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccact 117  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||  |||||||||||    
T  25052653 aatgaagtggtattttgtcacatttcattgtttggatttgtaaaattttaatggaatgggatggaacatgatggaatccatttcatcaaataccaccact 25052752  T
Q  118 tcttcatgtttttcattccatccaatttgggaggtatcgaatggaat 164  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||    
T  25052753 tcttcatgtttttcattccatccaatttggaaggtatggaatggaat 25052799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 21263706 - 21263577
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac-cacttcttcatgtttttcatt 134  Q
    ||||||||||||||||| |||||||||     ||||| ||||||||| | |||||||| ||||||||||| ||||||| || | |||||  |||| ||||    
T  21263706 cacattccattgtttggttttgtaaaaaagggatggaatgggatggagtgtgatggaacccattccatccaataccactcattccttcaa-ttttccatt 21263608  T
Q  135 ccatccaatttgggaggtatcgaatggaatg 165  Q
    ||||||||||||||  |||||||||||||||    
T  21263607 ccatccaatttggggtgtatcgaatggaatg 21263577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 26861479 - 26861404
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||  ||||||  |||||||||| ||||||||    
T  26861479 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacc 26861404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 35033942 - 35033863
Alignment:
Q  34 gtcacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    |||| |||||||||||||| |||| |||||| ||||||| ||| ||||||| ||||||||  |||||||||| |||||||    
T  35033942 gtcagattccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaataccac 35033863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 165
Target Start/End: Original strand, 46944053 - 46944181
Alignment:
Q  37 acattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac-cacttcttcatgtttttcattc 135  Q
    |||||||||||||||| | |||||||  | |||||| ||| ||||| | ||||||||  |||||||||| ||||||| || ||  |||  |||| |||||    
T  46944053 acattccattgtttggttatgtaaaaaatgaatggaatggaatggagtgtgatggaactcattccatccaataccactcattttgtca-attttccattc 46944151  T
Q  136 catccaatttgggaggtatcgaatggaatg 165  Q
    || ||||||||||  ||||| |||||||||    
T  46944152 cacccaatttggggtgtatccaatggaatg 46944181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 29844247 - 29844380
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccat 138  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||    
T  29844247 attccattgtttggatttgtaaaattttaatggagtgaaatggaatatgatggaatccattccatcctataccaccacttcctcttatttttcattctat 29844346  T
Q  139 ccaatttgggaggtatcgaatggaatggactttc 172  Q
    ||||||||||||||||  ||||||||||||||||    
T  29844347 ccaatttgggaggtatgcaatggaatggactttc 29844380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 11354777 - 11354852
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||  ||||||   ||||||||| ||||||||    
T  11354777 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactgattccatccaataccacc 11354852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 20989717 - 20989792
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacca 115  Q
    ||||||||||| | ||| |||||  | |||||| ||| |||||| | |||||||||||||||||||||| ||||||    
T  20989717 ttccattgtttaggtttataaaaaatgaatggaatggaatggaacaagatggaatccattccatcctatgccacca 20989792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 42025470 - 42025396
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    |||||||||||||| |||||||||  | |||||| | | ||||| | |||||||| ||||||||||| |||||||    
T  42025470 attccattgtttggttttgtaaaaaatgaatggaattgaatggagtgtgatggaacccattccatccaataccac 42025396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 24944999 - 24945075
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacca 115  Q
    ||||||||||||||||||| ||||  | | | |||||| ||||||||  ||||||  |||||||||| |||||||||    
T  24944999 attccattgtttggatttgcaaaaagtgactcgagtggaatggaatacaatggaactcattccatccaataccacca 24945075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 39 - 167
Target Start/End: Complemental strand, 50139682 - 50139554
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccat 138  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || | ||||| |||||||    
T  50139682 attccgttgtttggatttgtaaaattttaatggagtggaatggaataagatggaatccattccatcctataccaccacttcctcttattttttattccat 50139583  T
Q  139 ccaatttgggaggtatcgaatggaatgga 167  Q
    ||||||||||| ||||  |||||||||||    
T  50139582 ccaatttgggatgtatgcaatggaatgga 50139554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 23473768 - 23473894
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccat 138  Q
    |||||||||||||||| ||||||| || |||||| ||| |||||| ||||||||||||||||||||| |||||| ||  |  || ||||||||||||| |    
T  23473768 attccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattccatcccataccatcatctactcttgtttttcattccct 23473867  T
Q  139 ccaatttgggaggtatcgaatggaatg 165  Q
    |||||||| |||||||  |||||||||    
T  23473868 ccaatttgtgaggtatacaatggaatg 23473894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 40961534 - 40961649
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccat 138  Q
    |||||||||||||||| | ||||| || |||| ||||  || ||||||| ||||||| |||||||||||||||| ||  || || ||||||||||||| |    
T  40961534 attccattgtttggatatataaaaattgaatgtagtgaaatagaatatggtggaatctattccatcctataccatcatctcctcttgtttttcattccct 40961633  T
Q  139 ccaatttgggaggtat 154  Q
    ||||||||||||||||    
T  40961634 ccaatttgggaggtat 40961649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 35306878 - 35306751
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacca-cttcttcatgtttttcattccat 138  Q
    ||||||||||| ||||| ||||| ||  ||||| ||| |||||| ||||||||||||||||||| | ||||||||| |||  || | |||||||||||      
T  35306878 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctttctc-tatttttcattcccc 35306780  T
Q  139 ccaatttgggaggtatcgaatggaatgga 167  Q
    ||||||||||||||||  |||||||||||    
T  35306779 ccaatttgggaggtatgcaatggaatgga 35306751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 50109120 - 50109055
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcc 105  Q
    ||||||||||||||||||||| |  | |||||||||| |||||| |||||||||||||||||||||    
T  50109120 ttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatcc 50109055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 16039587 - 16039663
Alignment:
Q  18 aatggagtggtattttgtcacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaat 94  Q
    |||| ||||||||||| | |||||| ||| ||| ||||||||||||||||||||||  |||||||| ||||||||||    
T  16039587 aatgaagtggtattttatgacattctattatttagatttgtaaaattttaatggagcaggatggaacatgatggaat 16039663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 42117270 - 42117195
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||  ||||||  |||||||||| ||||||||    
T  42117270 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggaactcattccatccaataccacc 42117195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 41404078 - 41404151
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    ||||||||||||| |||||||||   ||||||| ||| ||||||| |||||||| |||||||||| ||||||||    
T  41404078 ttccattgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattccatcatataccac 41404151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 15581572 - 15581703
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattc 135  Q
    ||||||||||||||||| |||||||||    |||||| ||| ||||| | |||||||| ||||||||||| |||||| |  |||| |   |||| |||||    
T  15581572 cacattccattgtttggttttgtaaaaaagaaatggaatggaatggagtgtgatggaacccattccatccaataccatccattctcccaattttccattc 15581671  T
Q  136 catccaatttgggaggtatcgaatggaatgga 167  Q
    |  ||||||||||  ||||| |||||||||||    
T  15581672 cccccaatttggggtgtatccaatggaatgga 15581703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 49741324 - 49741399
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    ||||||||||||||||||| ||||    |||||||||||||||||||  ||||||  |||||||||| ||||||||    
T  49741324 attccattgtttggatttgcaaaaagcgaatggagtgggatggaatacaatggaactcattccatccaataccacc 49741399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 42365919 - 42366019
Alignment:
Q  67 aatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccatccaatttgggaggtatcgaatggaatgg 166  Q
    |||||| ||| ||||| | |||||||| ||||||||||| ||||||    ||||||   |||||||||||||| ||||||||  ||||| ||||||||||    
T  42365919 aatggaatggaatggagtgtgatggaacccattccatccaataccattcattcttccaatttttcattccatctaatttggggtgtatccaatggaatgg 42366018  T
Q  167 a 167  Q
    |    
T  42366019 a 42366019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 9340 - 9208
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccat 138  Q
    ||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || |  ||||||||||||    
T  9340 attccattgtttgaatttgtaaaattttaatggagtggaattgaatatgatggaatccattccatcctatgccaccacttcctc-ttattttcattccat 9242  T
Q  139 ccaatttgggaggtatcgaatggaatggactttc 172  Q
    ||||||||||||||||  |||||||| |||||||    
T  9241 ccaatttgggaggtatgcaatggaatagactttc 9208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 46651272 - 46651413
Alignment:
Q  42 ccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccatcca 141  Q
    ||||||||||||||| ||||||||||||||||||| || ||| ||||||| ||| ||| |||| ||||||||||||||||| | ||||||||||||||||    
T  46651272 ccattgtttggatttataaaattttaatggagtggaatcgaacatgatgggatctatttcatcatataccaccacttcttcttatttttcattccatcca 46651371  T
Q  142 atttgggaggtatcgaatggaatggactttcataattaaata 183  Q
    ||||| ||||||   |||| |||| |||||| ||||||||||    
T  46651372 atttgagaggtaagcaatgaaatgaactttcttaattaaata 46651413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 27011191 - 27011316
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccatc 139  Q
    ||||||||||||| |||||||||    |||||| ||| ||||| | |||||||| ||||||||||| |||||||   ||||||   ||||||||||||||    
T  27011191 ttccattgtttggttttgtaaaaaaggaatggaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatc 27011290  T
Q  140 caatttgggaggtatcgaatggaatg 165  Q
    |||||||||  ||||| |||||||||    
T  27011291 caatttggggtgtatccaatggaatg 27011316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 42029408 - 42029277
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac-cacttcttcatgtttttcatt 134  Q
    ||||||||||||||||| |||||||||     ||||| ||| ||||| |||||||||| ||||||||||| ||||||| || | |||||  |||||||||    
T  42029408 cacattccattgtttggttttgtaaaaaagggatggaatggaatggagtatgatggaacccattccatccaataccactcattccttcaa-tttttcatt 42029310  T
Q  135 ccatccaatttgggaggtatcgaatggaatgga 167  Q
    ||| ||||||||||  ||||| |||||||||||    
T  42029309 ccacccaatttggggtgtatccaatggaatgga 42029277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 43140441 - 43140483
Alignment:
Q  42 ccattgtttggatttgtaaaattttaatggagtgggatggaat 84  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43140441 ccattgtttggatttgtaaaattttaatggagtgggatggaat 43140483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 35231934 - 35231810
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacca-cttcttcatgtttttcattccat 138  Q
    ||||||||||| ||||| ||||| ||  ||||| ||| |||||| ||||||||||||||||||| | ||||||||| |||  || | |||||||||||      
T  35231934 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattccattccataccaccatctttctc-tatttttcattcccc 35231836  T
Q  139 ccaatttgggaggtatcgaatggaat 164  Q
    ||||||||||||||||  ||||||||    
T  35231835 ccaatttgggaggtatgcaatggaat 35231810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 25045381 - 25045455
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    |||||||||||||| |||| |||||| ||||||| ||| ||||||| ||||||||  |||||||||| |||||||    
T  25045381 attccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaataccac 25045455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 14567853 - 14567989
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctatacca-ccacttcttcatgtttttcattcca 137  Q
    ||||||||||||||||||| ||||  | |||||||||| ||||||||  ||||||  |||||||||| |||||| |||   |||||  |||||||||||     
T  14567853 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccatccaaaccttca-atttttcattccc 14567951  T
Q  138 tccaatttgggaggtatcgaatggaatggactttcata 175  Q
     ||||||||||  ||||| |||||||| || |||||||    
T  14567952 cccaatttggggtgtatccaatggaatagagtttcata 14567989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 110
Target Start/End: Original strand, 8925777 - 8925848
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctatac 110  Q
    |||||||||||||||| ||||||| || ||  |||||| |||||| ||| ||||||| ||||||||||||||    
T  8925777 attccattgtttggatatgtaaaaattgaacagagtggaatggaacatggtggaatctattccatcctatac 8925848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 30813419 - 30813344
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||  |||||   |||| ||||| ||||||||    
T  30813419 attccattgtttagatttgtaaaaaattaatggagtgggatggaatacaatggatctcatttcatccaataccacc 30813344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 29765338 - 29765263
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacca 115  Q
    |||||||||||||| |||||||||  | |||||| ||| |||||  ||||||||||| ||||||||| |||||||||    
T  29765338 attccattgtttggctttgtaaaacat-aatggaatggaatggagcatgatggaatcaattccatccaataccacca 29765263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 43141012 - 43141069
Alignment:
Q  126 tttttcattccatccaatttgggaggtatcgaatggaatggactttcataattaaata 183  Q
    ||||||||||||||||||||| ||| ||   ||||||||| |||||| ||||||||||    
T  43141012 tttttcattccatccaatttgagagataagcaatggaatgaactttcttaattaaata 43141069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 23417335 - 23417208
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccatc 139  Q
    ||||||||||||| |||||||||    |||||| ||| ||||| |||||||||| ||||||||||| |||||||   ||||||   ||||||||||||||    
T  23417335 ttccattgtttggttttgtaaaaaaggaatggaatggcatggagtatgatggaacccattccatccaataccactcattcttccaatttttcattccatc 23417236  T
Q  140 caatttgggaggtatcgaatggaatgga 167  Q
    |||||||||  ||||| |||||||||||    
T  23417235 caatttggggtgtatccaatggaatgga 23417208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 29428919 - 29428984
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcc 105  Q
    |||||||||||||||||||||||  | |||||| ||| ||| || |||||||||||||||||||||    
T  29428919 ttccattgtttggatttgtaaaaaatgaatggaatggaatgaaacatgatggaatccattccatcc 29428984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 5925250 - 5925185
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcc 105  Q
    ||||||||||||| |||||||||  |  ||||  ||| || |||||||||||||||||||||||||    
T  5925250 ttccattgtttggttttgtaaaaagtatatggtatggaatagaatatgatggaatccattccatcc 5925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 28219024 - 28219155
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac-cacttcttcatgtttttcatt 134  Q
    ||||||||||||||||| |||||||||     ||||| ||| ||||| | |||||||| ||||||||||| ||||||| || | |||||  |||||||||    
T  28219024 cacattccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttcaa-tttttcatt 28219122  T
Q  135 ccatccaatttgggaggtatcgaatggaatgga 167  Q
    ||| ||||||||||  ||||| |||||||||||    
T  28219123 ccacccaatttggggtgtatccaatggaatgga 28219155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 7444800 - 7444723
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    ||||||||||||||||| ||| |||||  | |||||| ||| ||||| | |||||||| ||||||||||| |||||||    
T  7444800 cacattccattgtttggttttctaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccac 7444723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 28199339 - 28199260
Alignment:
Q  34 gtcacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    |||| |||||||||||||| |||| |||||| ||||||| | | ||||||| ||||||||   ||||||||| |||||||    
T  28199339 gtcagattccattgtttggttttggaaaattgtaatggaatcgaatggaatgtgatggaacttattccatccaataccac 28199260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 44246427 - 44246468
Alignment:
Q  126 tttttcattccatccaatttgggaggtatcgaatggaatgga 167  Q
    |||||||||||||||||||||||  ||||| |||||||||||    
T  44246427 tttttcattccatccaatttggggtgtatccaatggaatgga 44246468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 38687 - 38565
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgtttttcattccatc 139  Q
    ||||||||||||| |||||||||     | ||| ||| ||||| | |||||||| ||||||||||| |||||||   ||||||   |||||||||||||     
T  38687 ttccattgtttggttttgtaaaa-----aaggaatggaatggagtgtgatggaacccattccatccaataccactcattcttccaatttttcattccatt 38593  T
Q  140 caatttgggaggtatcgaatggaatgga 167  Q
    |||||||||| ||||| |||||||||||    
T  38592 caatttgggatgtatccaatggaatgga 38565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 30084904 - 30084983
Alignment:
Q  34 gtcacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    |||| |||||||||||||| |||| |||||| ||||||| ||| ||||||| ||||||||  |||||||||| |||||||    
T  30084904 gtcagattccattgtttggttttgcaaaattgtaatggaatggaatggaatgtgatggaactcattccatccaataccac 30084983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 16597796 - 16597670
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccaccacttcttcatgt-ttttcattccat 138  Q
    ||||||||||||||||| ||||| ||  ||||| ||| |||||| ||||||||||| |||| |||| |||||||||  ||||  | | ||||||||||      
T  16597796 ttccattgtttggatttataaaaattggatggaatggcatggaacatgatggaatctattctatcccataccacca--tctttctctattttcattcccc 16597699  T
Q  139 ccaatttgggaggtatcgaatggaatgga 167  Q
    ||||||| ||||||||  |||||||||||    
T  16597698 ccaatttaggaggtatgcaatggaatgga 16597670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 32233012 - 32233087
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    ||||||||||||||||||| ||||  | |||||||||| ||||||||  ||||||  |||||||||| ||||||||    
T  32233012 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacc 32233087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 7506107 - 7506030
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    ||||||||||||||||| |||||||||  |||||||| ||  || || | |||||||||| ||||||||| |||||||    
T  7506107 cacattccattgtttggttttgtaaaaaattaatggaatgaaatagagtgtgatggaatcaattccatccaataccac 7506030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 4943536 - 4943664
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac-cacttcttcatgtttttcattcca 137  Q
    |||||||||||||| |||||||||     ||||| ||| ||||| | |||||||| ||||||||||| ||||||| || | |||||  |||| |||||||    
T  4943536 attccattgtttggttttgtaaaaaagggatggaatggaatggagtgtgatggaacccattccatccaataccactcattccttca-attttccattcca 4943634  T
Q  138 tccaatttgggaggtatcgaatggaatgga 167  Q
     ||||||||||  || || |||||||||||    
T  4943635 cccaatttggggtgtttccaatggaatgga 4943664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 31597057 - 31597093
Alignment:
Q  147 ggaggtatcgaatggaatggactttcataattaaata 183  Q
    |||||||| |||||||||| |||||||||||||||||    
T  31597057 ggaggtatggaatggaatgaactttcataattaaata 31597093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 30257 - 30184
Alignment:
Q  40 ttccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    ||||||||||||| |||||||||   ||||||| ||| ||||||| |||||||| |||||||||| ||||||||    
T  30257 ttccattgtttggttttgtaaaaaaataatggaatggaatggaatgtgatggaacccattccatcatataccac 30184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 44239 - 44164
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    |||||||||||||| |||||||||  | |||||| ||| ||||| | |||||||| ||||||||||| ||||||||    
T  44239 attccattgtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccacc 44164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 77960 - 77885
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    |||||||||||||| |||||||||  | |||||| ||| ||||| | |||||||| ||||||||||| ||||||||    
T  77960 attccattgtttggttttgtaaaaaatgaatggaatggaatggagtgtgatggaacccattccatccaataccacc 77885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 7365174 - 7365099
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccacc 114  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||  |||||   |||||||||| ||||||||    
T  7365174 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaataccacc 7365099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 19694680 - 19694614
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcc 105  Q
    ||||||||||||||||||| ||||  ||||||||  || |||||| || ||||||||||||||||||    
T  19694680 attccattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattccatcc 19694614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 29063579 - 29063652
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctatacca 112  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||  |||||   |||||||||| ||||||    
T  29063579 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaatacca 29063652  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 29118433 - 29118506
Alignment:
Q  39 attccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctatacca 112  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||  |||||   |||||||||| ||||||    
T  29118433 attccattgtttggatttgcaaaaagtgaatggagtgggatggaatacaatggatctcattccatccaatacca 29118506  T

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Target: scaffold0227 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 314 - 237
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac 113  Q
    ||||||||||||||||| ||||||||| |   ||||| ||| ||||| | |||||||| ||||||||||| |||||||    
T  314 cacattccattgtttggttttgtaaaaatgggatggaatggaatggagtgtgatggaacccattccatccaataccac 237  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 56922 - 57053
Alignment:
Q  36 cacattccattgtttggatttgtaaaattttaatggagtgggatggaatatgatggaatccattccatcctataccac-cacttcttcatgtttttcatt 134  Q
    ||||| ||||||||||| | |||||||  | |||||| ||| || || | |||||||| | ||||||||| ||||||| || ||  |||| |||||||||    
T  56922 cacatcccattgtttggttatgtaaaaaatgaatggaatggaatagagtgtgatggaaccaattccatccaataccactcatttagtcat-tttttcatt 57020  T
Q  135 ccatccaatttgggaggtatcgaatggaatgga 167  Q
    ||  |||| |||||||||||| |||||||||||    
T  57021 ccccccaaattgggaggtatccaatggaatgga 57053  T

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