View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8680_2 (Length: 404)
Name: NF8680_2
Description: NF8680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8680_2 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 47123203 - 47123595
Alignment:
| Q |
1 |
tacatcaagattacacattacatagtcataaaggaagcatccaacccgtgttttcaattcgacttgtctgttttctgttgtgcgtctccttgtgtgcaaa |
100 |
Q |
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| T |
47123203 |
tacatcaagattacacattacatagtcataaaggatgcatccaacccgtgttttcaattcgacttgtctgttttctgttgtgcgtctccttgtgtgcaaa |
47123302 |
T |
|
| Q |
101 |
ctgccataagctaaatacctcttttgctctagccatcacatgcaaacattgctccaatatactttcccaaagctttgtgtttcttcttctccaaagactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47123303 |
ctgccataagctaaatacctcttttgctctagccatcacatgcaaacattgctccaatatactttcccaaagctttgtgtttcttcttctccaaagactc |
47123402 |
T |
|
| Q |
201 |
cacaagatcatgcaagaagataccaattttgtaccgtcaagaatcaagatgttcacatgccatgnnnnnnngcctactcaaaatttctcaatactcgcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
47123403 |
cacaagatcatgcaagaagataccaattttgtaccgtcaagaatcaagatgttcgcatgccatgaaaaaaagcctactcaaaatttctcaatactcgcca |
47123502 |
T |
|
| Q |
301 |
taaaagattgtagcacattcatagacccaattttcaccaacattccacactaaatggccaaaccaagaagacatgtcaattatttagcttcat |
393 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47123503 |
taaaagattgtagcacattcatatacccaattttcaccaacattccaaactaaatggccaaaccaagaagacatgtcaattatttagcttcat |
47123595 |
T |
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