View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8680_low_1 (Length: 696)
Name: NF8680_low_1
Description: NF8680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8680_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 13 - 680
Target Start/End: Complemental strand, 42124391 - 42123724
Alignment:
| Q |
13 |
tgtactaatccatggaatgataatgaattccctttcattgatgttgtagagattaacctctatgaaaatattcctatggaagattcacaaaagcttgagt |
112 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124391 |
tgtactaaaccatgggatgaaaatgaattccctttcactgatgttggagagattaacctcaatgaaaatattcctatggaagattcacaaaagcttgagt |
42124292 |
T |
|
| Q |
113 |
ttaatccttatcttaaaagcaatgagttggatacaattacagctacttccagcacacaaagtgcttcaattgatcacggccgttcattgatctatgagat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124291 |
ttaatccttatcttaaaagcaatgagttggatacaattacagctacttccagcacacaaagtgcttcaattgatcacggccgttcattgatctatgagat |
42124192 |
T |
|
| Q |
213 |
atgtcagcacgtgcgcaatagacagccactcccagaagcttggagaaaccttgtacaacaatccaatgttaaggttgacttgtcctgctgtccaatagca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124191 |
atgtcagcacgtgcgcaatagacagccactcccagaagcttggagaaaccttgtacaacaatccaatgttaaggttgacttgtcctgctgtccaatagca |
42124092 |
T |
|
| Q |
313 |
tcatcagctccattacctgaaaaagaaccattgctgaaaaagaaagcgacaccagcattaacattgacaagaacatggtatcaaacattctcagcactct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42124091 |
tcatcagctccattacctgaaaaagaaccattgctgaaaaagaaagcgacaccagcattaacattgacaagaacatggtatcaaacattctcagcactct |
42123992 |
T |
|
| Q |
413 |
tcattcagccattactacaaactattttacctcacatggtaattggtttagctgcttttgttcctctaaacatggttgtttattttaaggatgtcaaaaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42123991 |
tcattcagccattactacaaactattttacctcacatggtaattggtttagctgcttttgttcctctaaacatggttgtttattttaaggatgtcaaaaa |
42123892 |
T |
|
| Q |
513 |
acttccactccattggttacttccattcttttggattctctcaggttttatagctgcattatcatgtgttatagccaaaagggtacttgtaggaaaaagg |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42123891 |
acttccactccattggttacttccattcttttggattctctcaggttttatagctgcattatcatgtgttatagccaaaagggtacttgtaggaaaaagg |
42123792 |
T |
|
| Q |
613 |
aaacttggtgaaacaataccaatatggagtnnnnnnnttgtctttgatagcacatggcaagctataag |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42123791 |
aaacttggtgaaacaataccaatatggagtaaaaaaattgtctttgatagcacatggcaagctataag |
42123724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 24928470 - 24928409
Alignment:
| Q |
373 |
acattgacaagaacatggtatcaaacattctcagcactcttcattcagccattactacaaac |
434 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
24928470 |
acattaacaagaaaatggtatcaaaccttctcatcactcttcattcagccatttctacaaac |
24928409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 596
Target Start/End: Complemental strand, 24928310 - 24928247
Alignment:
| Q |
533 |
ttccattcttttggattctctcaggttttatagctgcattatcatgtgttatagccaaaagggt |
596 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||| | |||||||||||||||| |||| |
|
|
| T |
24928310 |
ttccattgttttggattctctcaggtgttttagctgcattgttatgtgttatagccaaatgggt |
24928247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University