View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8680_low_2 (Length: 405)
Name: NF8680_low_2
Description: NF8680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8680_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 39000901 - 39001171
Alignment:
| Q |
18 |
aaactgatatattgaaattgaacaaattgcaaactttgaaaaaactaaatggatatcggaagacataaacaatggttaggctctaccatccatagttttt |
117 |
Q |
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| T |
39000901 |
aaactgatatattgaaattgaacaaattgcaaactttgaaaaaactaaatggatattggaagacataaacaatggttaggctctaccatccatagttttt |
39001000 |
T |
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| Q |
118 |
gtgatcgtaatggagtccgcattagtgatatttaatcccaattctctacgatattaagaatcacaatcacaatgcaattgcaaccacaatcacaatttaa |
217 |
Q |
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| T |
39001001 |
gtgatcgtaatggagtccgcattagtgatatttaaccccaattctctacgatattaagaatcacaatcacaatgcaattgcaaccacagtcacaatttaa |
39001100 |
T |
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| Q |
218 |
aatcttatttaacnnnnnnnnnnnntatccaagattaaaaacataacagcagattgaaccccagcatcaaaat |
290 |
Q |
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| T |
39001101 |
aatcttatttaac--aaaaaaaaaatatccaagattaaaaacataacagcagattgaaccccagcatcaaaat |
39001171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 39001166 - 39001240
Alignment:
| Q |
320 |
caaaattccttctctacccagcaacaaatggtaagacacaatcctctacatatgatcactgtcctaaacaccaaa |
394 |
Q |
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| T |
39001166 |
caaaattccttctctacccagcaacaaatggtaagacacaatcctctacttatgatcactatcctaaacaccaaa |
39001240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 248 - 362
Target Start/End: Complemental strand, 44752233 - 44752117
Alignment:
| Q |
248 |
aagattaaaaacataacagcagattgaaccccagcatcaaaa--tgaaaaagtatcacttcaacattcttaaaccaaaattccttctctacccagcaaca |
345 |
Q |
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| T |
44752233 |
aagattaaaaacataaaaacagattgaaccccaacatcaaaaagtgaaaaagtatcacttcgaccttcttaaacccaaattccttctctacccagcaaca |
44752134 |
T |
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| Q |
346 |
aatggtaagacacaatc |
362 |
Q |
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| T |
44752133 |
aattctaagaaacaatc |
44752117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 248 - 361
Target Start/End: Original strand, 39255174 - 39255289
Alignment:
| Q |
248 |
aagattaaaaacataacagcagattgaaccccagcatcaaaa--tgaaaaagtatcacttcaacattcttaaaccaaaattccttctctacccagcaaca |
345 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
39255174 |
aagattaaaaacataaaaacagattgaaccccaacatcaaaaagtgaaaaagtatcacttcgaccttcttaaacccaaattccttctctacccagcaaca |
39255273 |
T |
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| Q |
346 |
aatggtaagacacaat |
361 |
Q |
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| T |
39255274 |
aattctaagaaacaat |
39255289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 12351445 - 12351517
Alignment:
| Q |
248 |
aagattaaaaacataacagcagattgaaccccagcatcaaaa--tgaaaaagtatcacttcaacattcttaaa |
318 |
Q |
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|||||||||||||||| | ||||||||||||| |||||||| ||||||||||| ||||| || |||||||| |
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| T |
12351445 |
aagattaaaaacataaaaatagattgaaccccaacatcaaaaagtgaaaaagtattacttcgaccttcttaaa |
12351517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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