View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_high_10 (Length: 239)
Name: NF8681_high_10
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33237089 - 33236866
Alignment:
| Q |
1 |
gcagctagagctataagtgcttttgcatcccatgaataggttttcagctgttgaagtatccacattgttgtttgatgcacataacgttcgccacgaggcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237089 |
gcagctagagctataagtgcttttgcatcccatgaataggttttcagctgttgaagtatccacattgttgtttgatgcacataacgttcgccacgaggcg |
33236990 |
T |
|
| Q |
101 |
tggttatcatctgttgataatgttacaacggacaatttagtaatagtcatacacaaaacgcgcactacatacacaatgtcgtaaaacaaactctcccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236989 |
tggttatcatctgttgataatgttacaacggacaatttagtaatagtcatacacaaaacgcgcactacatacacaatgtcgtaaaacaaactctcccatt |
33236890 |
T |
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| Q |
201 |
ttttaaacattataaaagcatgat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
33236889 |
ttttaaacattataaaagcatgat |
33236866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33221252 - 33221179
Alignment:
| Q |
1 |
gcagctagagctataagtgcttttgcatcccatgaataggttttcagctgttgaagtatccacattgttgtttg |
74 |
Q |
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|||||||||| |||||||||||||||||||||||| || | | |||| | |||||| ||||| | ||||||||| |
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| T |
33221252 |
gcagctagagttataagtgcttttgcatcccatgagtaagatctcaggttttgaagaatccatagtgttgtttg |
33221179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26376374 - 26376264
Alignment:
| Q |
1 |
gcagctagagctataagtgcttttgcatcccatgaataggttttcagctgttgaagtatccacattgttgtttgatgcacataacgttcgccacgaggcg |
100 |
Q |
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||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
26376374 |
gcagctagagctacaagtgcttttgcatcccgtgagtaggttttcaattgttgaagtttccacattgttgtttggggcacataatgttcgccacgaggcg |
26376275 |
T |
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| Q |
101 |
tggttatcatc |
111 |
Q |
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||||||||||| |
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| T |
26376274 |
tggttatcatc |
26376264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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