View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_high_2 (Length: 368)
Name: NF8681_high_2
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 190 - 354
Target Start/End: Original strand, 21226857 - 21227021
Alignment:
| Q |
190 |
atgcgctctacttgagttatcattaatgtacatgttttgtttgtaaattaaatatgccaaaggaaggaagtcgagtgaacattaatgagttagtttataa |
289 |
Q |
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| T |
21226857 |
atgcgctctactcgatttatcattaatgtacatattttgtttataaattaaatatgccaaaggaaggaagtcgagtgaacattaatgagttagtttataa |
21226956 |
T |
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| Q |
290 |
cattttggtttcataatttttgacaagaattaatatcaaagttcaggtctcaacttatagttgat |
354 |
Q |
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| T |
21226957 |
cattttggtttcataatttttgacaagaattagtatcaaagttcaggtctcaactcatagttgat |
21227021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 10034506 - 10034599
Alignment:
| Q |
194 |
gctctacttgagttatcattaatgtacatgttttgtttgtaaattaaata-tgccaaa-ggaaggaagtcgagtgaacattaatgagttagttt |
285 |
Q |
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| T |
10034506 |
gctctactcgatttatcattaatgttcatgttttgctcctaaattaagtaatgccaaaaggaaggaagccgattgaacattaatgatttagttt |
10034599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 15939438 - 15939610
Alignment:
| Q |
16 |
tcattacctagtttacttgagatgcaagctacctagttacacttactctaatcttccatattagaatgtaattaggctaattgtgttacaacaagttgtc |
115 |
Q |
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| T |
15939438 |
tcattacctagtttacttgagatacaagctagctagttacacttactatactctcccatattagtgtgtaattaggctaattgtaatata-ctagttgtc |
15939536 |
T |
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| Q |
116 |
tataaatacttgatataactcacatttccatctatgagaatgagaccataattcatttcttactttccataaca |
189 |
Q |
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| T |
15939537 |
tataaatacttgatctaactcacatttccatctatgagaatgagactattattcatttcttactttccataaca |
15939610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 32704934 - 32704856
Alignment:
| Q |
111 |
ttgtctataaatacttgatataactcacatttccatctatgagaatgagaccataattcatttcttactttccataaca |
189 |
Q |
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| T |
32704934 |
ttgtctataaatatttgatgtatctcacatttccatctatgagaatgagactattattcattttttattttccataaca |
32704856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 12054620 - 12054681
Alignment:
| Q |
28 |
ttacttgagatgcaagctacctagttacacttactctaatcttccatattagaatgtaatta |
89 |
Q |
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| T |
12054620 |
ttacttgagatacaagctacttagttacatttagtctaatcttcaatattagcatgtaatta |
12054681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 20629339 - 20629279
Alignment:
| Q |
28 |
ttacttgagatgcaagctacctagttacacttactctaatcttccatattagaatgtaatt |
88 |
Q |
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| T |
20629339 |
ttacttgagatacaagctacttagttacatttagtctaatcttcaatattagcatgtaatt |
20629279 |
T |
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