View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_high_8 (Length: 246)
Name: NF8681_high_8
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33237068 - 33237299
Alignment:
| Q |
1 |
aagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaactctctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33237068 |
aagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaactctctgaa |
33237167 |
T |
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| Q |
101 |
aatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatattcttgagtgggccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33237168 |
aatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatattcatgagtgggccact |
33237267 |
T |
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| Q |
201 |
cggtctggtgttggttataacactcttgatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33237268 |
cggtctggtgttggttataacactcttgatgt |
33237299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33221231 - 33221273
Alignment:
| Q |
1 |
aagcacttatagctctagctgctttcactttggaatatggaaa |
43 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33221231 |
aagcacttataactctagctgctttcactttggaatatggaaa |
33221273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 26376353 - 26376580
Alignment:
| Q |
1 |
aagcacttatagctctagctgctttcactttggaatatggaaatcttttgtaccttactgagacttcaacctcatcagatcaacttgttaactctctgaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26376353 |
aagcacttgtagctctagctgctttcactttgaaatatggaaatcttttgcacctcattgagacttcaacctcatcagatcaacttgttaactctttgaa |
26376452 |
T |
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| Q |
101 |
aatactgaatcaaattcaaaacagaaaggtcactgtccctgccacagatttggtggagttgataatggatgtgcttctgcatattcttgagtgggccact |
200 |
Q |
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| ||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
26376453 |
acaacttaatcaaattcaaaatagaaaggtcattgttcctgtcacagatttggtggagttgataatggaagtgcttctgcatatt-acgagagggccact |
26376551 |
T |
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| Q |
201 |
cggtctggtgttggttataacactcttga |
229 |
Q |
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| ||||||||||||||||| |||||||| |
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| T |
26376552 |
cagtctggtgttggttatattactcttga |
26376580 |
T |
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