View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_low_1 (Length: 549)
Name: NF8681_low_1
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 12 - 532
Target Start/End: Complemental strand, 42089079 - 42088559
Alignment:
| Q |
12 |
atggacatcaaaaagagaaagttaacagaacaaaaaatatattaatttagtatagcatcgtgttaccaagcaggacctcatttccctgagaaccagaggg |
111 |
Q |
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| T |
42089079 |
atggagatcaaaaagagaaagttaacagaacaaaaaatatattaatttagtatagcatcgtgttaccaagcatgacctcattttcctgagaaccagaggg |
42088980 |
T |
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| Q |
112 |
tttagacaaaataaatcgagaattcaatcaatggtgtaacgggtttggaccagtaggcacacggcgcttctcaaccccataacgtgggtcgatcgctgtg |
211 |
Q |
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| T |
42088979 |
ttaagacaaaataaatcgagaattcaatcaatggtgtaacgggtttggaccagtaggcacacggcgcttctcaaccccataacgtggatcgatcgctgtg |
42088880 |
T |
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| Q |
212 |
tctgaaggatccttctgcactgcaaaaccttgaggatgatgatgcttaaagaaaggagagaagtgaaattttcttgctagaacttttctgctgtgatgag |
311 |
Q |
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| T |
42088879 |
tctgaaggatccttctgcactgcaaaaccttgaggatgaagatgcttaaagaaaggagagaagtgaaattttcttgctagaacttttctgctgtgatgag |
42088780 |
T |
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| Q |
312 |
agggtgatgaatgatgacttgcttgtatgatttgtttcttgtagatctttgagtacttgagattgtaatattgatgaaagagcaaaaataggagagatag |
411 |
Q |
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| T |
42088779 |
agggtgatgaatgatgacttgcttgtatgatttgtttcttgtagatctttgagtacttgagattgtaatattgatgaaagagcaaaaataggagagatag |
42088680 |
T |
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| Q |
412 |
ccatagtagaatgtgaactacttgataaattttgagggccatggtgatggaggaagagaaggagatggtaaatggtgagaaggggaagcatggagcatga |
511 |
Q |
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| T |
42088679 |
ccatagtagaatgtgaactacttgataaattttgagggccatggtgatggaggaagagaaggagatggtaaatggtgagaaggggaagcatggagcatga |
42088580 |
T |
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| Q |
512 |
attaagatatggaggaagaaa |
532 |
Q |
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| T |
42088579 |
attaagatatggaggaagaaa |
42088559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 42084068 - 42083998
Alignment:
| Q |
366 |
acttgagattgtaatattgatgaaagagcaaaaataggagagatagccatagtagaatgtgaactacttga |
436 |
Q |
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| T |
42084068 |
acttgagattgtaatgcccatgaaagagcaaaaataggaaagatagccatagaagaatgtgaattacttga |
42083998 |
T |
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