View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8681_low_12 (Length: 247)
Name: NF8681_low_12
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 41824221 - 41824434
Alignment:
| Q |
24 |
acatactttaatacacactacacatcttattctccctccacattttacctccnnnnnnnnnnnnnn----cccgttctattccattttgctttttcctct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41824221 |
acatactttaatacacactacacatcttattccccctccacattttacctccaaaaaaaaaaaaaaaaaacccgttctattccattttgctttttcctct |
41824320 |
T |
|
| Q |
120 |
--ctacctttgactatactttccaccacttcagtctttcaaaaaccataacaataaccacataactaagcaatgctatattgttaatatgtcatgttaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41824321 |
ctctacctttgactatactttccaccacttcagtctttcaaaaaccataacaataaccacataactaagcaatgctatattgttaatatgtcatgttaca |
41824420 |
T |
|
| Q |
218 |
ttaccccttcatct |
231 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
41824421 |
ttacaccttcatct |
41824434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University