View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_low_15 (Length: 244)
Name: NF8681_low_15
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 53219714 - 53219950
Alignment:
| Q |
1 |
atactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgctttgcaacaatcctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53219714 |
atactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgctttgcaacaatcctgc |
53219813 |
T |
|
| Q |
101 |
atagtatttaaacttttaataaaattcataaa-taactttagtcaagacaaattatgacaacaattcaacattacgaagctattctttaaatcatccatg |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53219814 |
atagtatttaaacttttaataaaattcataaattaagttcagtcaagacaaattatgacaacaaatcaacattacgaagctattctttaaatcatccatg |
53219913 |
T |
|
| Q |
200 |
attgttcatcataaaccctactcttcctgatgtccat |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
53219914 |
attgttcatcataaaccctactcttcctgatgtccat |
53219950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15411811 - 15412043
Alignment:
| Q |
1 |
atactaactttcttgccacaatttctcgatcctttgcctctgatcgattgaaccagatacatcctacactctccaaaatggtgctttgcaacaatcctgc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
15411811 |
atactaactttcttgccacaatttctcgatcctttgcttctgatcgattgaaccaaatgcatcctacactctccaaaatggtgctttgcaacaatcctgt |
15411910 |
T |
|
| Q |
101 |
atagtatttaaacttttaataaaattcataaataactttagtcaagacaaattatgacaacaattcaacattacgaagctattctttaaatcatccatga |
200 |
Q |
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| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15411911 |
acagtagttatacttttaataaaattcataaat---tttagtcaagacaagttatgaaaacaattcaacattacgaagctattctttaaatcatccatga |
15412007 |
T |
|
| Q |
201 |
ttgttcatcataaaccctactcttcctgatgtccat |
236 |
Q |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
15412008 |
ttgttcattataaaccctactcttcctgatgtccat |
15412043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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