View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8681_low_22 (Length: 228)
Name: NF8681_low_22
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_22 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (3 HSPs) |
| |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27876567 - 27876794
Alignment:
| Q |
1 |
cacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876567 |
cacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
27876666 |
T |
|
| Q |
101 |
gagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27876667 |
gagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagag |
27876766 |
T |
|
| Q |
201 |
ttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
27876767 |
ttctattcatccgctctgccacaccatt |
27876794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 8481612 - 8481784
Alignment:
| Q |
56 |
ttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttgg |
155 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| || ||| |||| || ||||| || |||||||| || ||||| | |||| |||| | || ||||||| |
|
|
| T |
8481612 |
ttccaaatctccatcggtgttttcaaaccaattgcagtttatggagatcgattgatcacataacatgccattttcgcagcttttgccaaaaaagacttgg |
8481711 |
T |
|
| Q |
156 |
ccattcccgctgttttcagcatagctcttgttctttctacgagagttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
||||||| |||||| || ||||| |||||||| | |||| ||||||| |||||| |||||||| | |||||| |
|
|
| T |
8481712 |
ccattcctgctgttctctgcataactcttgttttatctaggagagttttattcaatcgctctgctataccatt |
8481784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 48699679 - 48699906
Alignment:
| Q |
1 |
cacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699679 |
cacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
48699778 |
T |
|
| Q |
101 |
gagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48699779 |
gagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagag |
48699878 |
T |
|
| Q |
201 |
ttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
48699879 |
ttctattcatccgctctgccacaccatt |
48699906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 42268358 - 42268135
Alignment:
| Q |
5 |
tacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagc |
104 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268358 |
tacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagc |
42268259 |
T |
|
| Q |
105 |
gatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42268258 |
gatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagagttct |
42268159 |
T |
|
| Q |
205 |
attcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
42268158 |
attcatccgctctgccacaccatt |
42268135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30948041 - 30948268
Alignment:
| Q |
1 |
cacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
100 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
30948041 |
cacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgtcgttgatggt |
30948140 |
T |
|
| Q |
101 |
gagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30948141 |
gagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccatttccgctgttttcagcatagctcttgttctttctaggagag |
30948240 |
T |
|
| Q |
201 |
ttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30948241 |
ttctattcatccgctctgccacaccatt |
30948268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 2001305 - 2001109
Alignment:
| Q |
32 |
gaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagcgatttattacataacaggcggttttca |
131 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || |||||||| || ||||| || || ||| |||| ||||||| |
|
|
| T |
2001305 |
gaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatggagatcgattgatcacgtaataggcagttttca |
2001206 |
T |
|
| Q |
132 |
ccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
| |||||||||||||| ||||| |||| ||| | |||| ||| ||| ||||||||||| | || ||||||| |||||||||||||||| |||||||| |
|
|
| T |
2001205 |
cagcttctgcccagaaagacttagccactcctgttgttctcaacatggctcttgttctatataggagagttatattcatccgctctgctacaccatt |
2001109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 5821137 - 5821360
Alignment:
| Q |
5 |
tacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagc |
104 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821137 |
tacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagc |
5821236 |
T |
|
| Q |
105 |
gatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5821237 |
gatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagagttct |
5821336 |
T |
|
| Q |
205 |
attcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5821337 |
attcatccgctctgccacaccatt |
5821360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 2815125 - 2815348
Alignment:
| Q |
5 |
tacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
2815125 |
tacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccataggagtcttcaaatcaatcaacgttgatggtgagc |
2815224 |
T |
|
| Q |
105 |
gatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2815225 |
gatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagagttat |
2815324 |
T |
|
| Q |
205 |
attcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2815325 |
attcatccgctctgccacaccatt |
2815348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 42587408 - 42587183
Alignment:
| Q |
3 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
102 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| | |||| |||| || |||||||| || |
|
|
| T |
42587408 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgtttacaaaccaattgcggttgatggaga |
42587309 |
T |
|
| Q |
103 |
gcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagtt |
202 |
Q |
| |
|
||||| || || ||||||||||||||||| |||||||||||||| ||||| |||| | | |||||| ||| ||| ||||||||| | |||| ||||||| |
|
|
| T |
42587308 |
tcgattgatcacgtaacaggcggttttcacagcttctgcccagaaagacttagccactactgctgttctcaacatggctcttgttttatctaagagagtt |
42587209 |
T |
|
| Q |
203 |
ctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
42587208 |
ctattcatccgctctgctacaccatt |
42587183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 9441954 - 9442177
Alignment:
| Q |
5 |
tacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtgagc |
104 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9441954 |
tacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcaccgttgatggtgagc |
9442053 |
T |
|
| Q |
105 |
gatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagttct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9442054 |
gatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagagttct |
9442153 |
T |
|
| Q |
205 |
attcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9442154 |
attcatccgctctgccacaccatt |
9442177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 228
Target Start/End: Original strand, 24596348 - 24596573
Alignment:
| Q |
3 |
cgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggtga |
102 |
Q |
| |
|
||||||||| ||| || ||||| |||| ||||||||||| ||||||||| ||||| |||||||| ||||| |||||| |||| || ||||||| || |
|
|
| T |
24596348 |
cgtacacagtacatccgaacacatgtaaggaagaataatcaggtggctttccgttccaaatctccattggtgttttcaaaccaattgcggttgatgtaga |
24596447 |
T |
|
| Q |
103 |
gcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagagtt |
202 |
Q |
| |
|
||||| || || ||| ||||||||||||| |||||||||||||| ||||| |||| | |||||| ||| ||| |||||| || | | || ||||||| |
|
|
| T |
24596448 |
tcgattgatcacgtaataggcggttttcacagcttctgcccagaaagacttagccactattgctgttctcaacatggctctttttttatttaagagagtt |
24596547 |
T |
|
| Q |
203 |
ctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
24596548 |
ctattcatccgctctgctacaccatt |
24596573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41720869 - 41720642
Alignment:
| Q |
1 |
cacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
100 |
Q |
| |
|
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41720869 |
cacgtacacaggacaaccaaaaacatgcagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaatcgccgttgatggt |
41720770 |
T |
|
| Q |
101 |
gagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41720769 |
gagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctaggagag |
41720670 |
T |
|
| Q |
201 |
ttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41720669 |
ttctattcatccgctctgccacaccatt |
41720642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 34354469 - 34354242
Alignment:
| Q |
1 |
cacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
34354469 |
cacgtacacaggacaaccaaacacatgtagagaagaataatctactggctttcctttccacatctccattggtgtcttcaaatcaattgtcgttgatggt |
34354370 |
T |
|
| Q |
101 |
gagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34354369 |
gagcgatttattacataacaggcggttttcactgcttctgcccagaacgacttggccattcctgctgttttcagcatagctcttgttctttctaggagag |
34354270 |
T |
|
| Q |
201 |
ttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
34354269 |
ttctattcatccgctctgccgcaccatt |
34354242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 827938 - 827711
Alignment:
| Q |
1 |
cacgtacacaggacaaccaaacacttgtagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827938 |
cacgtacacaggacaaccaaacacatgcagagaagaataatctactggctttcctttccacatctccatcggtgtcttcaaatcaatcgccgttgatggt |
827839 |
T |
|
| Q |
101 |
gagcgatttattacataacaggcggttttcaccgcttctgcccagaacgacttggccattcccgctgttttcagcatagctcttgttctttctacgagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
827838 |
gagcgatttattacataacaggcggttttcactgcttctgcacagaacgacttggccattcccgctgttttcagcataactcttgttctttctaggagag |
827739 |
T |
|
| Q |
201 |
ttctattcatccgctctgccacaccatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
827738 |
ttctattcatccgctctgccacaccatt |
827711 |
T |
|
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