View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_low_3 (Length: 497)
Name: NF8681_low_3
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 35921770 - 35922235
Alignment:
| Q |
17 |
catcacatccaagtgttacaccataacaattgaacattagataataaaaattagaggatgatctatcaatgttgcgctgaatcagtcatcaactttattg |
116 |
Q |
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|||||| || || |||||||||||||||||||||| | | |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921770 |
catcacgtctaaatgttacaccataacaattgaacgtcaaataataaagatcagaggatgatctatcaatgttgcgctgaatcagtcatcaactttattg |
35921869 |
T |
|
| Q |
117 |
acattctaaaataagaaataatataaagcaaacaaatatttcaaatgtctcacttagtattggagcaatatacttctatttagcaaaaccatgaaaattc |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921870 |
acattctaaaataagaaataacataaagcaaacaaatatttcaaatgtctcacttagtattggagcaatatacttctatttagcaaaaccatgaaaattc |
35921969 |
T |
|
| Q |
217 |
tttaatgaaaataggagtaaatacacttttactaattgctccttcccatctcaagtccatcccctttaccatcatggtcaacaaatctagaccagtatgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921970 |
tttaatgaaaataggagtaaatacacttttactaattgctccttcccatctcaagtccatcccctttaccatcatggtcaacaaatctagaccagtatgg |
35922069 |
T |
|
| Q |
317 |
gtgtcccttccaaaccttgcccatctcttcaattggaatgcccttagtttcaggcaacatgaaatacacaaagaatgtcatcaccactacaaagaaggca |
416 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922070 |
gtgtcccttccaaaccttgctcatctcttcaattggaatgcccttagtttcaggcaacatgaaatacacaaagaatgtcatcaccactacaaagaaggca |
35922169 |
T |
|
| Q |
417 |
aagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaat |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922170 |
aagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaat |
35922235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 481
Target Start/End: Complemental strand, 36203005 - 36202813
Alignment:
| Q |
289 |
catggtcaacaaatctagaccagtatgggtgtcccttccaaaccttgcccatctcttcaattggaatgcccttagtttcaggcaacatgaaatacacaaa |
388 |
Q |
| |
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|||| |||||||||||||||||| | || ||| |||||||| || |||||||||||||||| || || |||||||||||||| | ||| | ||| | |
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| T |
36203005 |
catgttcaacaaatctagaccagaagggatgtgatttccaaactctgtccatctcttcaattggtattcctttagtttcaggcaataagaagaatacata |
36202906 |
T |
|
| Q |
389 |
gaatgtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaa |
481 |
Q |
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| T |
36202905 |
gattgacatcaccaaaacaaagaaggcaaagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaa |
36202813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 33052797 - 33052734
Alignment:
| Q |
110 |
tttattgacattctaaaataagaaataatataaagcaaacaaatatttcaaatgtctcacttag |
173 |
Q |
| |
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||||||| ||||||||||| ||||||||| || |||||||||||||||||||| ||||||| |
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| T |
33052797 |
tttattggtattctaaaatagcaaataatatgaaacaaacaaatatttcaaatgtgacacttag |
33052734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 42809823 - 42809760
Alignment:
| Q |
110 |
tttattgacattctaaaataagaaataatataaagcaaacaaatatttcaaatgtctcacttag |
173 |
Q |
| |
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||||||| ||||||||||| ||||||||| || |||||||||||||||||||| ||||||| |
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| T |
42809823 |
tttattggtattctaaaatagcaaataatatgaaacaaacaaatatttcaaatgtgacacttag |
42809760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 18233799 - 18233859
Alignment:
| Q |
393 |
gtcatcaccactacaaagaaggcaaagaagataaacaagccaaacttcatgtgacagagca |
453 |
Q |
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|||||||| || || || ||||| ||||||||||| || ||||||||||||||||| |||| |
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| T |
18233799 |
gtcatcacaacaacgaaaaaggcgaagaagataaataatccaaacttcatgtgacaaagca |
18233859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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