View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8681_low_5 (Length: 344)
Name: NF8681_low_5
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 193
Target Start/End: Complemental strand, 37372435 - 37372290
Alignment:
| Q |
49 |
attatcaaatttcattctattaagtgagattggttacatgaatcaaatgacactataatattatgtcatatatcacatcattctcgaactcatcaatctc |
148 |
Q |
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| T |
37372435 |
attatcaaattttattctattaagtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatcactctcgaactcatcaatctc |
37372336 |
T |
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| Q |
149 |
taaaa-ttttataatattttctcttgtagttttcctaaatctccac |
193 |
Q |
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| T |
37372335 |
taaaacttttataataatttctcttgtagttttcctaaatctccac |
37372290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 37372304 - 37372175
Alignment:
| Q |
211 |
ttcctaaatctccacttgccactgttaatttgactaccatccatctcatttatttccttaatgcaaaatttataggttttgtatgtacataacattattt |
310 |
Q |
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| T |
37372304 |
ttcctaaatctccacttgccactagtaatttgacaaccatccatctcatttatttccttaatgcaaaatttataggtcttgtatgtacataacattattt |
37372205 |
T |
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| Q |
311 |
tggtgcggtcttgagtgatgtccatctcat |
340 |
Q |
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| T |
37372204 |
tggtgcggtcttgagtgaggtccatgtcat |
37372175 |
T |
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