View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8681_low_9 (Length: 278)
Name: NF8681_low_9
Description: NF8681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8681_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4617621 - 4617884
Alignment:
| Q |
1 |
tttcaaatacatcattgttcttttgtttatatgcttcaaagacatccttgttctttgataatgcttcctcaaattcaaggcatgtttgagaacaaacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617621 |
tttcaaatacatcattgttcttttgtttatatgcttcaaagacatccttgttctttgataatgcttcctcaaattcaaggcatgtttgagaacaaacaat |
4617720 |
T |
|
| Q |
101 |
tgtagtaatgtataagcattaaatcaattttatgttgtgactccttgcattgtgactcgagtgtatctctgacagcaagagctacaaaaagaaaggaaac |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617721 |
tgtagtaatgtataaacattaaatcaattttatgttgtgactccttgcattgtgactcgagcgtatctctgacagcaagagctacaaaaagaaaggaaac |
4617820 |
T |
|
| Q |
201 |
agtcgatgaacaaaaattcatcacagattaagcgctgccagatattcaagattccaagaaagtg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617821 |
agtcgatgaacaaaaattcatcacagattaagcgctgccagatattcaagattccaagaaagtg |
4617884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4617588 - 4617643
Alignment:
| Q |
1 |
tttcaaatacatcattgttcttttgtttatatgcttcaaagacatccttgttcttt |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
4617588 |
tttcaaatacatcattgttcttttgtttatatgtttcaaatacatcattgttcttt |
4617643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 264
Target Start/End: Complemental strand, 45985779 - 45985679
Alignment:
| Q |
164 |
tatctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagattaagcgctgccagatattcaagattccaagaaagt |
263 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
45985779 |
tatctctgccagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattagatacagattaagcgctgccagatattcaatattccaaaaaagt |
45985680 |
T |
|
| Q |
264 |
g |
264 |
Q |
| |
|
| |
|
|
| T |
45985679 |
g |
45985679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 43038372 - 43038495
Alignment:
| Q |
140 |
actccttgcattgtgactcgagtgtatctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagattaagcgctgcc |
239 |
Q |
| |
|
||||| ||||| ||||||| || |||||||||| |||| |||||||||||| || ||| ||||| ||||||||||||| | |||||||||| ||||| |
|
|
| T |
43038372 |
actccctgcatagtgactcaagcttatctctgacggcaaaagctacaaaaaggaatgaagcagtcaatgaacaaaaattagttacagattaagggctgca |
43038471 |
T |
|
| Q |
240 |
agatattcaagattccaagaaagt |
263 |
Q |
| |
|
| |||| |||||| ||| ||||| |
|
|
| T |
43038472 |
atgtatttaagatttcaaaaaagt |
43038495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 39242887 - 39242793
Alignment:
| Q |
167 |
ctctgacagcaagagctacaaaaagaaaggaaacagtcgatgaacaaaaattcatcacagattaagcgctgccagatattcaagattccaagaaag |
262 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |||||| |||||| | ||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
39242887 |
ctctgacagcaagagctacaaaaggagaggaaacagtcaatgaac-aaaattagttacagattaagcactgccagatattcaacattccaaaaaag |
39242793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University