View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8682_high_1 (Length: 605)
Name: NF8682_high_1
Description: NF8682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8682_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 145 - 533
Target Start/End: Original strand, 7807873 - 7808270
Alignment:
| Q |
145 |
gcttcttctccaccaagcatggaaatttaaggataattgtaggtcttttgttaaatgtagttacaataatattagatatgtcatgaaccaatatttacaa |
244 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||| |
|
|
| T |
7807873 |
gcttcttctccaccaagcacggaagtttaaggataattgtaggtcttttgttaaatgtagttacaataatcttagatatgccatgaatcaatgtttacaa |
7807972 |
T |
|
| Q |
245 |
gtaaggacaatcatcatcttattagttggatttataagtgagaacaattattattttacaagttagttttgtaaattaacaagctggnnnnnnnaggtta |
344 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
7807973 |
gtaaggacaatcatcatcttactagtctgatttataagtgagaacaattattattttacaagttagttttgtaaattaacaagttggtttttttaggtta |
7808072 |
T |
|
| Q |
345 |
agtccaacccaaattttaaaatagtattagagtctatcaaatatc---------atttgttatcatatgttatcaggtcatcattatcaaaccacttgat |
435 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
7808073 |
agtccaacccaaattctaaaatagtattagagtctatcaaatatcatttcgattatttgttatcatatgttatcaggtcatcattattaaaccacttggt |
7808172 |
T |
|
| Q |
436 |
cacattccagatgtctcgtcctagttctatgtgtgttaagagtctcacttgaatgatatatgacctcaattattatcttacaaactagttttataaac |
533 |
Q |
| |
|
|||||| ||| ||||||||| |||| |||||||||||||||| |||||| ||||||||||| ||||||| ||||| |||||||||||||||| |||| |
|
|
| T |
7808173 |
cacatttcaggtgtctcgtcttagtcttatgtgtgttaagagtttcacttaaatgatatatggcctcaatcattattttacaaactagttttacaaac |
7808270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 7807666 - 7807823
Alignment:
| Q |
39 |
ctaactccaatatatcggttcgagctatatgatgatctatgaaatttgttggttaacta-------gctatttgtcttagatatgattaaagatttttca |
131 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
|
|
| T |
7807666 |
ctaactccaatatatcggtccgagctatatgatgatctatgaaatttgttggttaattactaattagctatttgtcttagatatgattaaagatttttta |
7807765 |
T |
|
| Q |
132 |
gataccgttgttcgcttcttctccaccaagcatggaaatttaaggataattgtaggtc |
189 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
7807766 |
gataccgttgttcacttcttctccaccaagcacggaagtttaaggataactgtaggtc |
7807823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 562 - 598
Target Start/End: Original strand, 7808274 - 7808310
Alignment:
| Q |
562 |
ttttgtatgataacgacttgttaggcgagtattatct |
598 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
7808274 |
ttttgtatgataacaacttgttaggtgagtattatct |
7808310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University