View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8682_high_2 (Length: 592)
Name: NF8682_high_2
Description: NF8682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8682_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 12 - 574
Target Start/End: Original strand, 8334375 - 8334939
Alignment:
| Q |
12 |
attatacttttatcaagtctgatccagtatatcttgtgctggtaggacatgcttcggttgtttaatatatttctacttttgccggttnnnnnnnntatac |
111 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8334375 |
attatacttttatcaagtctgatccgatacatcttgtgctggtaggacatgcttcggttgtttaatatatttctacttttgccggttaaaaaaa-tatac |
8334473 |
T |
|
| Q |
112 |
atagagtgattgaaacatcttaacaaatatctagaatgtaatgtgtgattcaatggatgtaaaataattaaattatagtctaacactgcatgcatacaaa |
211 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
8334474 |
atagagtgcttgaaacatctttacaaatatctagaatgtaatgtgtgattcaatggatgtaaaataattaaatgatagtctaagactgcatgcatacaaa |
8334573 |
T |
|
| Q |
212 |
ttaaattcattcataatatatcttataacatcagaattgtaatagagtaatttgatataagcttacatatttaccagctgcaaagagaaaggacatggca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8334574 |
ttaaattcattcataatatatcttataacatcagaattgtaatagagtaatttgatataagcttacatatttaccagctgcaaagagaaaggacatggca |
8334673 |
T |
|
| Q |
312 |
gctggtttatcagtttcagcaatctcctcagcccttgttcctagctaccaactgagtcatggccaaagaatgtaattctccaaac--nnnnnnnnattcc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8334674 |
gctggtttatcagtttcagcaatctcctcagcccttgttcctagctaccaactgagtcatggccaaagaatgtaattctccaaacttttttttttattcc |
8334773 |
T |
|
| Q |
410 |
tcccttctcgcttataattctttgaactttatattttgcattataatttctgaa-ttttttcatgctcttctcttctttacaatggttataattttagaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8334774 |
tcccttctcgcttataattctttgaactttatattttgcattataatttctgaatttttttcatgctcttctcttctttacaatgcttataattttagaa |
8334873 |
T |
|
| Q |
509 |
atgctctcttaattattccaggggtgcttattggctagagtctttcaatggaactcaaggtaatca |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8334874 |
atgctctcttaattattccaggggtgcttattggctagagtctttcaatggaactcaaggtaatca |
8334939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University