View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8682_low_3 (Length: 470)
Name: NF8682_low_3
Description: NF8682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8682_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 39922620 - 39923070
Alignment:
| Q |
1 |
tatacacgcatgagcagaaactaatctctccagaaaattgatattccatttaacggttcgnnnnnnnnnnnnnnnnnnnnnnncatacacattggtcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39922620 |
tatacacgcatgagcagaaactaatctctccagaaaattgatattccatttaacggttcgatattttttgatatatattttttcatacacattggtcaat |
39922719 |
T |
|
| Q |
101 |
gatcaaacattaaattaaatgatcaagggtccaagttaataccatttttgctagagtatgttgattataagttcatagata--tccttaaaacaaaaagt |
198 |
Q |
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| T |
39922720 |
gatcaaacattaaattaaatgatcaagggtccaagttaataccatttatgctagagtatgttgattataagttcatagatacatccttaaaacaaaaagt |
39922819 |
T |
|
| Q |
199 |
ccatagatacataatcctttcttggtgatgtgatatagtatgggtttgatttagttttgcggacttatacgtatgttcatgtttagaatgccattttgct |
298 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
39922820 |
ccatagatacataatgctttcttggtgatgtgatatagtatgggtttgatttagttttgcggagttatacgtatgt------ttagaatgccattttgct |
39922913 |
T |
|
| Q |
299 |
gtgaatttgtaaagttaaaaatctcaacttctagtacatgtgcgtctgcgtcattcctgccgaggaaacaaacggtccaatagtttatttctttgcacat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39922914 |
gtgaatttgtaaagttaaaaatctcaacttctagtacatgtgcgtctgcgtcattcctgccgaggaaacaaacggtccaatagtttatttctttgcacat |
39923013 |
T |
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| Q |
399 |
aaggtagaaaaccttgcgtaattatatgcaatattacatcaacatatttgttgatag |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39923014 |
aaggtagaaaaccttgcgtaattatatgcaatattacatcaacatttttgttgatag |
39923070 |
T |
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