View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8682_low_4 (Length: 342)
Name: NF8682_low_4
Description: NF8682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8682_low_4 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 20967270 - 20966944
Alignment:
| Q |
1 |
tttgaacattatggtatatatgttgactgagcatgcatatcaatccattggaggaaccaagaactaggttacagtcttcgttcttcacttgatagtgact |
100 |
Q |
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| T |
20967270 |
tttgaacattatggtatatatgttgactgagcatgcatatcaatccattggaggaaccaagaactaggttacagtcttcgttcttcacttgatagtgatt |
20967171 |
T |
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| Q |
101 |
gagtacgaaatcttcggaaatggttataaactgattaggcaaggaatagtctttgttcttgcacgaaaacattgtgaggtgtttagggtttcgtggagat |
200 |
Q |
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| T |
20967170 |
gagtacaaaatctttggaaatggttataaactgactaggaaaggaatagtctttgttcttgcacgaaaacattgtgaggtgtttagggttttgtggagat |
20967071 |
T |
|
| Q |
201 |
gatttaatgaggtgcattttggcgaaggtgggatcagaggagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtcaa |
300 |
Q |
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| T |
20967070 |
gatttaatgaggtgcattttggcgaaggtgggatcagaggagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtcaa |
20966971 |
T |
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| Q |
301 |
gcaatgatagaacttccgcgatgagat |
327 |
Q |
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| T |
20966970 |
gcaatgataggacttcagcgatgagat |
20966944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 20980076 - 20979756
Alignment:
| Q |
12 |
tggtatatatgttgactgagcatgcatatcaatccattggaggaaccaagaactaggttacagtcttcgttcttcacttgatagtgactgagtacgaaat |
111 |
Q |
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| T |
20980076 |
tggtatatatattcactgagcatgcatatcaatccattggaggaaccaagaacccggttacagtcttcgttattaaattgatagtgactgagtacgaaat |
20979977 |
T |
|
| Q |
112 |
cttcggaaatggttataaactgattaggcaaggaatagtctttgttcttgcacgaaaacattgtgaggtg-----tttagggtttcgtggagatgattta |
206 |
Q |
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| T |
20979976 |
cttcggaaatggttataaactgattaggcaaggaatagtctttgttcttgcacgaaaacattgtgaggtgaggtgtttagggtttcgtggagatgattta |
20979877 |
T |
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| Q |
207 |
atgaggtgcattttggcgaaggtgggatcagaggagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtcaagcaatg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20979876 |
atgaggtgcattttggcgaaggtgggatcagaggagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtcaagaaatg |
20979777 |
T |
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| Q |
307 |
atagaacttccgcgatgagat |
327 |
Q |
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|||| ||||| |||||||||| |
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| T |
20979776 |
ataggacttcagcgatgagat |
20979756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 4721 - 4643
Alignment:
| Q |
198 |
gatgatttaatgaggtgcattttggcgaaggtgggatcagaggagatgagtgaattccatgatttgcaaacacatttgagtt |
279 |
Q |
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| T |
4721 |
gatgatttcttgaggtgcatttggacgaagatgggatc---ggagatgagtgagttccatgatttgctcacacatttgagtt |
4643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 6402564 - 6402619
Alignment:
| Q |
237 |
gaggagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattt |
292 |
Q |
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| T |
6402564 |
gaggaaattagtgaattccatgatttgcagacacatttgagtgtcatcaggaattt |
6402619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 12735682 - 12735715
Alignment:
| Q |
252 |
ttccatgatttgcaaacacatttgagttgcatca |
285 |
Q |
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| T |
12735682 |
ttccatgatttgcaaacacatttgaattgcatca |
12735715 |
T |
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