View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_high_11 (Length: 241)
Name: NF8683_high_11
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 28091377 - 28091162
Alignment:
| Q |
8 |
ggagaagcagagaccactacaagtgatgaaaaaacagtacccaaaagaagaaga-aaaaacgacgtaagtgcagttattatcagtaattatgtgtaagaa |
106 |
Q |
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| T |
28091377 |
ggagaagcactgaccactacaagtgttgaaaaaacaatacacaa--gaagaaaagaaaaacgacgtaagtgcagttattatcagtaattatgtgtaagaa |
28091280 |
T |
|
| Q |
107 |
aatgtgtataaactgatacgatccataccagctgagcaggagcaggctcaaaataaattgctaatgcgtatgccatgccagtcacacagtatacaaggca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28091279 |
aatgtgtataaactgatacgatccataccagctgagcaggagcaggctcaaaataaattgctaatgcgtatgccatgccagtcacacagtatacaaggca |
28091180 |
T |
|
| Q |
207 |
taccaaaaccgcataatt |
224 |
Q |
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|||||||||||||||||| |
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| T |
28091179 |
taccaaaaccgcataatt |
28091162 |
T |
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