View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_high_12 (Length: 231)
Name: NF8683_high_12
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 51 - 212
Target Start/End: Complemental strand, 9375696 - 9375535
Alignment:
| Q |
51 |
cgatccaaattgatatcaagggagatattgaaattgaaaactgaaacaagaaatcaatctacaaaatcttccaataacaacaaaagtaaaacagaaaagg |
150 |
Q |
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| T |
9375696 |
cgatccaaattgatatcaagggagatattgaaattgaaaactgaaacaagaaatcaatctacaaaatcttccaataacaacaaaagtaaaacagaaaagg |
9375597 |
T |
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| Q |
151 |
tgagggaattattctttggaagataaatttgcagcatttgaatttcgattgatagaaggtca |
212 |
Q |
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| T |
9375596 |
tgagggaattattctttggaagataaatttgcagcatttgaatttcgattgatagaaggtca |
9375535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 13017568 - 13017417
Alignment:
| Q |
51 |
cgatccaaattgatatcaagggagatattgaaattgaaaactgaaacaagaaatcaatctacaaaatcttccaataacaacaaaagtaaaacagaaaagg |
150 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
13017568 |
cgatccagattgatatcaacggagatattgaaattgaaaactgaaacaagaattga-tctacaaaatcttccaataacaacaaaagtagaa-agaaaagg |
13017471 |
T |
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| Q |
151 |
tgagggaattattctttggaagataaatttgcagcatttgaatttcgattgata |
204 |
Q |
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| T |
13017470 |
tgagggaattattctttggatgataaatttgcagcatttgaatttcgattgata |
13017417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 46177946 - 46177794
Alignment:
| Q |
51 |
cgatccaaattgatatcaagggagatattgaaattgaaaactgaaacaagaaatcaatctacaaaatcttccaataacaacaaaagtaaaacagaaaagg |
150 |
Q |
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||||||| ||||||||||| ||||||||||||||| ||||||||||||| || | | ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
46177946 |
cgatccagattgatatcaacggagatattgaaattaaaaactgaaacaacaattga-tctacaaaatcttccaataacaacaaaagtagaaaagaaaagg |
46177848 |
T |
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| Q |
151 |
tgagggaattattctttggaagataaatttgcagcatttgaatttcgattgata |
204 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
46177847 |
tgagggaattattctttggatgataaatttgtagcatttgaatttcgattgata |
46177794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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