View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8683_high_2 (Length: 426)

Name: NF8683_high_2
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8683_high_2
NF8683_high_2
[»] chr6 (20 HSPs)
chr6 (18-426)||(6473382-6473790)
chr6 (22-417)||(6464768-6465163)
chr6 (26-417)||(6525810-6526199)
chr6 (17-419)||(6504910-6505312)
chr6 (18-222)||(6462364-6462568)
chr6 (28-415)||(6527634-6528021)
chr6 (18-222)||(6496104-6496308)
chr6 (288-419)||(6457074-6457205)
chr6 (207-415)||(1828231-1828448)
chr6 (284-417)||(1839236-1839369)
chr6 (215-346)||(1842191-1842322)
chr6 (126-419)||(6516453-6516746)
chr6 (42-148)||(1832347-1832453)
chr6 (216-260)||(1822453-1822497)
chr6 (264-397)||(1827361-1827494)
chr6 (289-358)||(1832196-1832265)
chr6 (309-417)||(6520921-6521029)
chr6 (37-148)||(1842372-1842482)
chr6 (80-142)||(1836144-1836206)
chr6 (59-117)||(1847024-1847082)
[»] chr7 (5 HSPs)
chr7 (34-358)||(46382867-46383192)
chr7 (207-409)||(46383634-46383834)
chr7 (307-420)||(4045952-4046065)
chr7 (284-420)||(3754173-3754309)
chr7 (350-414)||(9665659-9665723)
[»] chr1 (1 HSPs)
chr1 (120-253)||(35244508-35244641)
[»] chr4 (1 HSPs)
chr4 (350-414)||(13536683-13536747)


Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 6473790 - 6473382
Alignment:
Q  18 acataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccata 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473790 acataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccata 6473691  T
Q  118 atccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccacca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6473690 atccactgtctctcttgttagaccatagaactcccatcatcctattctcttttgtaaaatcttcctcatagagattctctccttcttttacatgccacca 6473591  T
Q  218 cattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6473590 cattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgcagaatagtat 6473491  T
Q  318 gcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacctta 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6473490 gcattcacggcttcactagtactctcttggtttcttccatccgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacctta 6473391  T
Q  418 aaggagtat 426  Q
    |||||||||    
T  6473390 aaggagtat 6473382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 22 - 417
Target Start/End: Original strand, 6464768 - 6465163
Alignment:
Q  22 aatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatcc 121  Q
    ||||||||| |||||| || | || |||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||  |||||||||||||||||    
T  6464768 aatcaacatttgaaaataagaattcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataatcc 6464867  T
Q  122 actgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacatt 221  Q
    ||||||||||||||||| ||| ||||| || | || | |||| ||||| | |||| | || || || | ||| |||||  ||||||||||||||||||||    
T  6464868 actgtctctcttgttagcccaaagaacaccaaccaccttattctctttcgcaaaaacctcgtcgtaaacattatctccaccttttacatgccaccacatt 6464967  T
Q  222 ttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcat 321  Q
    | ||| ||| |||||||||||||||||||||||||| ||   ||   ||| |  |  |||  |||||||| ||| ||||| |||||||||||||||||||    
T  6464968 tgagctgcatgaatttccaatgatgtaagtgtcgatccaactgcaacgagatgagtgtcgccatatgccaaacccatcaaagctgctgaatagtatgcat 6465067  T
Q  322 tcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacctta 417  Q
    |||| |||||||||||||||||||| |||||||||||| | ||||| ||||||||||||||||| ||||||| |||  ||||||| ||||||||||    
T  6465068 tcacagcttcactagtactctcttgatttcttccatctccgaactcagttaaccctccggcccacgaatgcaatttaaaaagatcgaaacacctta 6465163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 417
Target Start/End: Original strand, 6525810 - 6526199
Alignment:
Q  26 aacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactg 125  Q
    |||||| || ||||| |||| |||||| |||| |||||||| ||||||||| ||||||||||||||||||||| |||| ||| |||||||||| ||||||    
T  6525810 aacatcagagaacaagacttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactg 6525909  T
Q  126 tctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacattttag 225  Q
    ||||| ||||| ||||| || || || || ||| |||| | |||  ||||  ||| |||||| | |||| |||| |||||||||||||||||||||||||    
T  6525910 tctcttttgttcgaccaaagtacaccaattatcttattgtttttactaaacactttctcatacatattccctccttcttttacatgccaccacattttag 6526009  T
Q  226 cagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcac 325  Q
    ||||||||||||| ||||||| ||||||||||||| |||||| ||||||||||||||  |||||||| || ||||| ||||| | ||| || |||||| |    
T  6526010 cagcaagaatttcaaatgatgcaagtgtcgatgcagtcgctgcgagttctgcatcgtcgtatgccattcccatcaaggctgc-gcataataagcattc-c 6526107  T
Q  326 ggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacctta 417  Q
     |||||||| ||||||||||| ||||||||||| |  || || |||| |||||| |||||||| || | ||| || ||||| ||||||||||    
T  6526108 agcttcactggtactctcttgatttcttccatcagtgaattctgttagccctccagcccaagagtgtaatttatacagatcgaaacacctta 6526199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 6504910 - 6505312
Alignment:
Q  17 aacataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccat 116  Q
    ||||||||||||||| ||||||||| ||| ||||||||||  ||||||||  |||||||||||   ||||  |||| ||||| |||  |||||||||||     
T  6504910 aacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagctgaattcctgtcctagcttctctccattcaggtggagcaaaccaa 6505009  T
Q  117 aatccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccacc 216  Q
    | |||||| ||||| || |||  ||| | ||||||||  || ||||| ||||||||||| ||||| ||||| |  ||| |   ||  || ||||||||||    
T  6505010 agtccactatctcttttattattccacaaaactcccactattctattctcttttgtaaactcttcttcatacaatttcccattcttcttaacatgccacc 6505109  T
Q  217 acattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagta 316  Q
    ||||||| |   ||||||||||||||||||| ||||| ||| || | |     ||||  | |||   |||||| || || ||||| ||||| | ||||||    
T  6505110 acattttggttccaagaatttccaatgatgttagtgttgatccaatggacacaagttgagaatcaccatatgctattcccatcaatgctgcagcatagta 6505209  T
Q  317 tgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacctt 416  Q
    ||||||||| |||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||| |||||||  ||||||||||| |||||||||    
T  6505210 tgcattcacagcttcactagtactctcttgattccttccatctgaaaactcggttagccctccggcccacgaatgcaacttgtaaagatcgaaacacctt 6505309  T
Q  417 aaa 419  Q
    |||    
T  6505310 aaa 6505312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 6462568 - 6462364
Alignment:
Q  18 acataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccata 117  Q
    ||||| |||||||| || ||||| |||| ||||||||||| |||||||| ||||||||||||||| ||||||||| |  || |||  ||||||||||| |    
T  6462568 acatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaa 6462469  T
Q  118 atccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccacca 217  Q
     |||||| |||||||||||||||||||||| |||||| ||||| || ||||||||||| |||||  |||| || || ||||| ||||||| |||||||||    
T  6462468 gtccactttctctcttgttagaccatagaaatcccatgatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccacca 6462369  T
Q  218 cattt 222  Q
    |||||    
T  6462368 cattt 6462364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 415
Target Start/End: Original strand, 6527634 - 6528021
Alignment:
Q  28 catctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtc 127  Q
    |||| ||||||||||||| |||||||||   ||| ||||  |  ||||  ||||||||   |||| ||||| |||||||||||||| | |||||||||||    
T  6527634 catcagaaaacaaaacttcagaaataggcgacaagggtaaaacttgaacaccaagccttgcttctctccattcagccggagcaaacgacaatccactgtc 6527733  T
Q  128 tctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacattttagca 227  Q
    ||||||||||||||||| ||||||||| |||||||| || |||||||||||||  |||||||| ||  |  ||| ||| |||||||||||||||||  |     
T  6527734 tctcttgttagaccataaaactcccatgatcctattctcctttgtaaaatctttttcatagagcttaccgtcctttttaacatgccaccacattttctct 6527833  T
Q  228 gcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacgg 327  Q
    |||  |||||||||||||| |||||| ||| || | |     ||||  | |||   ||||||||| || ||||| ||||  | |||||||||||| || |    
T  6527834 gcacaaatttccaatgatgcaagtgttgatccaatggacacaagttgaggatcaccatatgccattcccatcaatgctgaagcatagtatgcatttacag 6527933  T
Q  328 cttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacct 415  Q
    |||||||| |   |  ||| || |||||||||||||||||||||| |||||||||||| || ||||  ||| ||||||||||||||||    
T  6527934 cttcactacttgccatttgattacttccatctgcaaactcggttacccctccggcccatgagtgcaacttgaaaagatcaaaacacct 6528021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 6496104 - 6496308
Alignment:
Q  18 acataatcaacatctgaaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccata 117  Q
    ||||| || ||||| || ||||| |||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||  || | |  ||||||||||| |    
T  6496104 acatattcgacatcagagaacaatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaa 6496203  T
Q  118 atccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccacca 217  Q
     |||||| ||||||||||| |||||||||| |||||| |||| |||  |||||||||| |||||  |||| || ||  |||| ||||||| |||||||||    
T  6496204 gtccactttctctcttgttggaccatagaaatcccatgatccgattcgcttttgtaaattcttcggcatatagttttcctccttcttttatatgccacca 6496303  T
Q  218 cattt 222  Q
    |||||    
T  6496304 cattt 6496308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 288 - 419
Target Start/End: Original strand, 6457074 - 6457205
Alignment:
Q  288 gccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaag 387  Q
    ||||| || ||||| ||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||  ||||| |||||||    
T  6457074 gccattcccatcaatgctgcagcatagtatgcattcacagcttcactagtactctcttgatttcttccatctgcaaattcgattagtcctccagcccaag 6457173  T
Q  388 aatgcagtttgtaaagatcaaaacaccttaaa 419  Q
    |||| | ||| |||||||| ||||||||||||    
T  6457174 aatgaaatttataaagatcgaaacaccttaaa 6457205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 415
Target Start/End: Complemental strand, 1828448 - 1828231
Alignment:
Q  207 acatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccata---------ccga 297  Q
    |||||||||||||||||||||||||||| ||||||||| | |||||| ||||||   |||| || ||| ||||| | |||| |||||         || |    
T  1828448 acatgccaccacattttagcagcaagaacttccaatgacgcaagtgttgatgcaacggctgcgaattccgcatcttcatataccatagtaaccataccaa 1828349  T
Q  298 tcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagttt 397  Q
    |||| ||||| ||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || || |||| ||||||||||||||| || | |||    
T  1828348 tcaaggctgcggaatagtatgcattcactgcatcactagtgctctcttgatttctaccatcagcgaattctgttagccctccggcccaagagtgtaattt 1828249  T
Q  398 gtaaagatcaaaacacct 415  Q
     |||||||| ||||||||    
T  1828248 ataaagatcgaaacacct 1828231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 417
Target Start/End: Complemental strand, 1839369 - 1839236
Alignment:
Q  284 atatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcc 383  Q
    |||| ||||||| ||||| ||||  ||||||||||||||||| | ||||||||| || ||||| ||||| ||||| || ||||| |||| ||||||||||    
T  1839369 atattccataccaatcaaagctgaagaatagtatgcattcactgattcactagtgctatcttgatttctaccatcagcgaactctgttagccctccggcc 1839270  T
Q  384 caagaatgcagtttgtaaagatcaaaacacctta 417  Q
    ||||| || | ||| |||||||| ||||||||||    
T  1839269 caagagtgtaatttataaagatctaaacacctta 1839236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 346
Target Start/End: Complemental strand, 1842322 - 1842191
Alignment:
Q  215 ccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatag 314  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| | ||||  |||||  |||| |  |||   ||||  ||||| ||||| ||||||    
T  1842322 ccacatttttgcagcaagaatttccaatgatgtaagtgttgatgcaatggctgcaagttcaacatcttcttatattatacgaatcaaggctgcagaatag 1842223  T
Q  315 tatgcattcacggcttcactagtactctcttg 346  Q
    |||||||||||| |||| ||||| ||||||||    
T  1842222 tatgcattcacgacttcgctagtgctctcttg 1842191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 419
Target Start/End: Complemental strand, 6516746 - 6516453
Alignment:
Q  126 tctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacattttag 225  Q
    |||||||| |||||||  | || |||||  |||||||| ||||||||||| ||||| ||||| |  ||| |   || ||| ||||||||||||||||| |    
T  6516746 tctctcttattagacctcaaaattcccactatcctattctcttttgtaaactcttcatcatacaatttcccattctttttaacatgccaccacattttgg 6516647  T
Q  226 cagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcac 325  Q
       ||||||||||||||||||| ||||| |||||| | |     ||||  | |||   ||||||||| || || || ||||| | |||||||||||||||    
T  6516646 ttccaagaatttccaatgatgttagtgttgatgcaattgacacaagttgaggatcaccatatgccattcccattaaggctgcagcatagtatgcattcac 6516547  T
Q  326 ggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacaccttaaa 419  Q
     |||||||||||||||||||| |  ||||||| | || | | ||||| |||| ||||||| ||||| |   |||||||||| ||| ||||||||    
T  6516546 agcttcactagtactctcttgataccttccatgttcagagttggttagccctacggcccacgaatgtaacatgtaaagatcgaaaaaccttaaa 6516453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 1832453 - 1832347
Alignment:
Q  42 acttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagacc 141  Q
    |||| ||| |||||||  ||||||| ||||||||| || |||| ||||||||||||  |||| ||| |||||||||  ||||||||||| |||| |||||    
T  1832453 acttaagagataggaagaaatggtaagagctgaatgccgagccgacattctttccactcagcaggaccaaaccatagaccactgtctcttttgtaagacc 1832354  T
Q  142 atagaac 148  Q
    | |||||    
T  1832353 aaagaac 1832347  T

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Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 1822497 - 1822453
Alignment:
Q  216 cacattttagcagcaagaatttccaatgatgtaagtgtcgatgca 260  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||    
T  1822497 cacattttagcagaaagaatttccaatgatgtaagtgttgatgca 1822453  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 397
Target Start/End: Complemental strand, 1827494 - 1827361
Alignment:
Q  264 gctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaa 363  Q
    |||| |||||| ||||| | |||| |||||   ||||| ||||| ||||| ||||||||||  ||||||||||  |||||||| ||||||||||| |  |    
T  1827494 gctgcgagttcagcatcttcatataccatagtaatcaaggctgcagaataatatgcattcattgcttcactagcgctctcttgatttcttccatcagtga 1827395  T
Q  364 actcggttaaccctccggcccaagaatgcagttt 397  Q
    | || |||| |||||| |||||||| || |||||    
T  1827394 attcagttagccctccagcccaagagtgtagttt 1827361  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 1832265 - 1832196
Alignment:
Q  289 ccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatc 358  Q
    |||||||  |||| ||||| ||||| ||||||||||  |||||||||||  |||||||||||||||||||    
T  1832265 ccataccagtcaaggctgcagaataatatgcattcattgcttcactagtgttctcttggtttcttccatc 1832196  T

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Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 6521029 - 6520921
Alignment:
Q  309 gaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaa 408  Q
    ||||| |||||||| |  ||||||||| ||| || ||| | |||||||| | || |||| | ||| ||||| ||||||||||| || |||||||||||||    
T  6521029 gaataatatgcattaatagcttcactactacccttttgatatcttccattttcatactcagctaatcctccagcccaagaatggagcttgtaaagatcaa 6520930  T
Q  409 aacacctta 417  Q
    |||| ||||    
T  6520929 aacatctta 6520921  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 1842482 - 1842372
Alignment:
Q  37 acaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgtt 136  Q
    |||||| || ||||||||| |  | ||||| ||||||||| || |||| ||||||||||||  |||| ||| |||||||||  ||| ||||||| |||||    
T  1842482 acaaaatttcagaaatagggagtagtggtaagagctgaatgccgagccaacattctttccactcagcaggaccaaaccatagacca-tgtctcttttgtt 1842384  T
Q  137 agaccatagaac 148  Q
    |||||| |||||    
T  1842383 agaccacagaac 1842372  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 1836206 - 1836144
Alignment:
Q  80 aagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagacca 142  Q
    ||||| ||||||||||||  |||| ||| |||||||||  ||||||||||| |||||||||||    
T  1836206 aagccgacattctttccactcagctggaccaaaccatagaccactgtctcttttgttagacca 1836144  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 1847082 - 1847024
Alignment:
Q  59 caatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccata 117  Q
    |||||||| |||||||||||| |||| ||||||||||||   ||||||| |||||||||    
T  1847082 caatggtaagagctgaattccgagccgacattctttccactgagccggaccaaaccata 1847024  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 358
Target Start/End: Original strand, 46382867 - 46383192
Alignment:
Q  34 aaaacaaaacttgagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctctt 133  Q
    ||||||| |||| ||||||||||| |||||||| ||||||||| ||||| |||| ||| |||||   ||| ||| |||||||||  ||||||||||| ||    
T  46382867 aaaacaagacttcagaaataggaaacaatggtaagagctgaatcccaaggctacgttccttccacttagctggaccaaaccatagaccactgtctctttt 46382966  T
Q  134 gttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccacattttagcagcaaga 233  Q
    ||||||||| || |  || || | | |||| ||||   | ||  |||  ||||| | |||| ||    |||| |||||||||||||||||||||||||||    
T  46382967 gttagaccaaagtataccaattaccttattctcttcactgaacactttatcatacatattcacttttcctttcacatgccaccacattttagcagcaaga 46383066  T
Q  234 atttccaa-tgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctgctgaatagtatgcattcacggcttca 332  Q
    |||||||| || |||||||||||| ||| | |||  |||||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||  | ||||    
T  46383067 atttccaaatggtgtaagtgtcgaagcagttgctacgagttctgcatcgtcatatgcaatactgatcaaagctgcagaatagtatgcattcaaagtttca 46383166  T
Q  333 ctagtactctcttggtttcttccatc 358  Q
    |||||||||| ||| |||||||||||    
T  46383167 ctagtactcttttgatttcttccatc 46383192  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 409
Target Start/End: Original strand, 46383634 - 46383834
Alignment:
Q  207 acatgccaccacattttagcagcaagaatttccaatgatgtaagtgtcgatgcattcgctgtgagttctgcatcgttatatgccataccgatcaacgctg 306  Q
    |||||||||||||||||  ||| ||| || |||||   |||||||||||||||| ||||   ||||||||||| || |||| |||||  |||||| ||||    
T  46383634 acatgccaccacatttt--cagaaaggatatccaactgtgtaagtgtcgatgcagtcgccacgagttctgcattgtcatatcccatattgatcaaggctg 46383731  T
Q  307 ctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatc 406  Q
    | |||| |||||||||||   ||||||||| ||||||| | ||||||| ||| |  || || |||| ||| || ||||||||||| | ||| || |||||    
T  46383732 cagaattgtatgcattcaaaacttcactagcactctctcgatttcttcaatcagtgaattcagttagcccaccagcccaagaatgtaatttatacagatc 46383831  T
Q  407 aaa 409  Q
    |||    
T  46383832 aaa 46383834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 420
Target Start/End: Original strand, 4045952 - 4046065
Alignment:
Q  307 ctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatc 406  Q
    |||||||||| |||||||| |||||||||| ||| ||||| |||||||||| | |||| ||||| || ||    |||||||||||||  |||||  ||||    
T  4045952 ctgaatagtacgcattcacagcttcactagaactttcttgatttcttccatgttcaaattcggtcaaacccgaagcccaagaatgcaacttgtatggatc 4046051  T
Q  407 aaaacaccttaaag 420  Q
    ||||||||||||||    
T  4046052 aaaacaccttaaag 4046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 420
Target Start/End: Complemental strand, 3754309 - 3754173
Alignment:
Q  284 atatgccataccgatcaacgctgctgaatagtatgcattcacggcttcactagtactctcttggtttcttccatctgcaaactcggttaaccctccggcc 383  Q
    |||||| | ||| ||||| ||||||||||| ||||||||||| |||||||| | ||| ||||| || ||||||| | || | || || |  ||| | |||    
T  3754309 atatgctagacctatcaatgctgctgaataatatgcattcactgcttcacttgaactttcttgattccttccattttcatattcagtcactcctgcagcc 3754210  T
Q  384 caagaatgcagtttgtaaagatcaaaacaccttaaag 420  Q
    ||||||||||  ||| ||| |||||||||||||||||    
T  3754209 caagaatgcaacttgaaaaaatcaaaacaccttaaag 3754173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 9665723 - 9665659
Alignment:
Q  350 tcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacc 414  Q
    |||||| |||| ||||||  |||| ||||| ||||| |||||||| |||||||||||||||||||    
T  9665723 tcttccttctggaaactcttttaatcctcctgcccatgaatgcagcttgtaaagatcaaaacacc 9665659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 35244641 - 35244508
Alignment:
Q  120 ccactgtctctcttgttagaccatagaactcccatcatcctattttcttttgtaaaatcttcctcatagagattctctccctcttttacatgccaccaca 219  Q
    ||||| || ||||| |||||||| | ||||||||| |||||||| ||||||||||||||||  ||||| | |||  | | || ||| |||||||||||||    
T  35244641 ccactatccctcttattagaccacaaaactcccatgatcctattctcttttgtaaaatctttttcatacatatttccactctttttaacatgccaccaca 35244542  T
Q  220 ttttagcagcaagaatttccaatgatgtaagtgt 253  Q
     ||||||||||  |||||||||||||| ||||||    
T  35244541 atttagcagcacaaatttccaatgatgcaagtgt 35244508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 414
Target Start/End: Complemental strand, 13536747 - 13536683
Alignment:
Q  350 tcttccatctgcaaactcggttaaccctccggcccaagaatgcagtttgtaaagatcaaaacacc 414  Q
    |||||| |||| ||||||  |||| ||||| ||||| |||||||| |||||||||||||||||||    
T  13536747 tcttccttctggaaactcttttaatcctcctgcccatgaatgcagcttgtaaagatcaaaacacc 13536683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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