View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8683_high_4 (Length: 342)
Name: NF8683_high_4
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 39091623 - 39091300
Alignment:
| Q |
1 |
attgatctattatacacttaccttagtagtatatattgagatcaattagaagacattctaaatgcgtccccatnnnnnnngaattcaggtcttggtgatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
39091623 |
attgatctattatacacttaccttagtagtatatattgagatcaattagaagacattctaaatgcgtccccataaaaaaa-aattcaggtcttgatgatc |
39091525 |
T |
|
| Q |
101 |
cctagtttttgttcttgaagtgatacaaaatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39091524 |
cctagtttttgttcttgaagtgatacaaaatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaacca |
39091425 |
T |
|
| Q |
201 |
cactcaaaagcttacatacatgaatattgatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactagttgcttctgtggtgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39091424 |
cactcaaaagcttacatacatgaatattgatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactagttgcttctgtggtgc |
39091325 |
T |
|
| Q |
301 |
ccaatgaccattacctgtaggtggt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
39091324 |
ccaatgaccattacctgtaggtggt |
39091300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 129 - 306
Target Start/End: Original strand, 44714272 - 44714449
Alignment:
| Q |
129 |
aatgtttaacatcaccaatgtgaatactatgtgctcccattggaattctcctagtcccagacttatcaaccacactcaaaagcttacatacatgaatatt |
228 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||| | | |||||| ||||||||||| |
|
|
| T |
44714272 |
aatgtttaacatcaccaatgtgaagactatgttctcccattggaattctcctaatcccagatttatcaactacactaagcaacttacaaacatgaatatt |
44714371 |
T |
|
| Q |
229 |
gatcctcactcgttgctgagccttagcaggaacataaactttctcaaaagccactagttgcttctgtggtgcccaatg |
306 |
Q |
| |
|
| || || | ||||| || ||| |||||||||| ||||||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
44714372 |
tactctaaccctttgcttagtcttggcaggaacatgaactttctcaaaagcaactaggcttttctgtggtacccaatg |
44714449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University