View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8683_low_1 (Length: 662)
Name: NF8683_low_1
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 30107266 - 30107521
Alignment:
| Q |
18 |
aaattgagatggagggagtagttgttgttaacttgctaggttaaacccgagcccttcaactccttcaacctttagctcaaacgaattgagctatccaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30107266 |
aaattgagatggagggagtagttgttgttaacttgctaggttaaacccgagcccttcaactccttcaacctttagctcaaacgaattgagctatccaacc |
30107365 |
T |
|
| Q |
118 |
tcttcaagacttatatcagcttaaaattgac-cacatcttcttatagcagaaaattaacatgagcatgctgtgttttcccctcatcatgtacacaataac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30107366 |
tcttcaagacttatatcagcttaaaattgactgacaacatcttatagcagaaaattaacatgagcatgctgtgttttcacctcatcatgtacacaataac |
30107465 |
T |
|
| Q |
217 |
caaattgtgcattaaatttctttctcaaatcaaatactaatcatttgcaacccatg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30107466 |
caaattgtgcattaaatttctttctcaaatcaaatactaataatttgcaacccatg |
30107521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 30107596 - 30107655
Alignment:
| Q |
465 |
cgcgaatgccatacgtgaacagcagtgcgtttgtggatgatgaagctacgcacatttatt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30107596 |
cgcgaatgccatacgtgaacagcagtgcgtttgtggatgatgaagctacgcacatttatt |
30107655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 30107545 - 30107580
Alignment:
| Q |
404 |
aaaacagaggaagattgcatccatggaagcaagcag |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
30107545 |
aaaacagaggaagattgcatccatggaagcaagcag |
30107580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 49094667 - 49094703
Alignment:
| Q |
581 |
acaacaacttttcctctattcttattggataaaaaca |
617 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
49094667 |
acaaccacttttcctcttttcttattggataaaaaca |
49094703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 617
Target Start/End: Complemental strand, 10840858 - 10840822
Alignment:
| Q |
581 |
acaacaacttttcctctattcttattggataaaaaca |
617 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
10840858 |
acaaccactttttctctattcttattggataaaaaca |
10840822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 617
Target Start/End: Original strand, 38910538 - 38910566
Alignment:
| Q |
589 |
ttttcctctattcttattggataaaaaca |
617 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38910538 |
ttttcctctattcttattggataaaaaca |
38910566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 581 - 617
Target Start/End: Original strand, 14151693 - 14151729
Alignment:
| Q |
581 |
acaacaacttttcctctattcttattggataaaaaca |
617 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
14151693 |
acaaccacttttcctctcttcttattggataaaaaca |
14151729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University