View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_10 (Length: 259)
Name: NF8683_low_10
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 9795314 - 9795081
Alignment:
| Q |
1 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
100 |
Q |
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| T |
9795314 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
9795215 |
T |
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| Q |
101 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagcttggcatcacaaagacaagattaaaggagcgctaccttgtgtttatagaa |
200 |
Q |
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| T |
9795214 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagtttggcatcacaaagacaagattaaaggagtgctaccttgtgtttatagaa |
9795115 |
T |
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| Q |
201 |
gtcttctttatggttggtctctggagaggaatgt |
234 |
Q |
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| T |
9795114 |
gtcttctttatggttggtctttggagaggaatgt |
9795081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45145721 - 45145954
Alignment:
| Q |
1 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45145721 |
gacttatgttaaactcggaaaagaagacgaagcattgggtattttcaagaatttggataagtataaatgtcttattgatgaattcacggttactgctatt |
45145820 |
T |
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| Q |
101 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagcttggcatcacaaagacaagattaaaggagcgctaccttgtgtttatagaa |
200 |
Q |
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| T |
45145821 |
attaatgctctttgctctaaagggcatgctaagagagctgaaggtgtagattggcatcacaaagacaagattaaaggagagctaccttgtgtttatagaa |
45145920 |
T |
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| Q |
201 |
gtcttctttatggttggtctctggagaggaatgt |
234 |
Q |
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| T |
45145921 |
gtcttctttatggttggtctatggagaggaatgt |
45145954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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