View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_11 (Length: 258)
Name: NF8683_low_11
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 32629172 - 32628927
Alignment:
| Q |
1 |
tcaaaagtattctgaaagaaagatagaagaaacaggtatatatggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629172 |
tcaaaagtattctgaaagaaagatagaagaaacaggtatatatggaagtagctaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaa |
32629073 |
T |
|
| Q |
101 |
caactccttagttcaggtattttata----cataactttgtaagagaaatgtttggatcatatacattaatatattgatgacacatcgttttttggttga |
196 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
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| T |
32629072 |
caactccttagttcaggtattttatacatacataactttgtaagagaaatgtttggatcacatatattaatatattgatgacacatcgtttcttggttga |
32628973 |
T |
|
| Q |
197 |
ggtaaataagaatttgaaatgacaactacatattcatcaataaaag |
242 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32628972 |
ggtaaataagaatttgacatgacaactacatattcatcaataaaag |
32628927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 32710169 - 32710112
Alignment:
| Q |
63 |
cacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtat |
120 |
Q |
| |
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|||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
32710169 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtat |
32710112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 32705244 - 32705168
Alignment:
| Q |
42 |
atggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggt |
118 |
Q |
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|||||| |||| ||||| ||||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||| |
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| T |
32705244 |
atggaattagcaaaggtgctacacatgaatggaggcgctggagatgcaagttatgcagataactccttacttcaggt |
32705168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 27737678 - 27737613
Alignment:
| Q |
61 |
tacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttata |
126 |
Q |
| |
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|||||||||||||| || ||| |||| | ||||||||||||||||||||| ||||||||| ||||| |
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| T |
27737678 |
tacacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggtatattata |
27737613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 5812248 - 5812169
Alignment:
| Q |
42 |
atggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtatt |
121 |
Q |
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||||||||||| | ||||||| |||||||||| | |||| |||| | |||||||||||||||||||| |||||||||| |
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| T |
5812248 |
atggaagtagctcaagtactacccatgaatggaagtgttgaagaagcaagctatgcaaacaactccttgcttcaggtatt |
5812169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 8028711 - 8028773
Alignment:
| Q |
57 |
gtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
119 |
Q |
| |
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||||| |||||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
8028711 |
gtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
8028773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 21945124 - 21945064
Alignment:
| Q |
58 |
tactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggt |
118 |
Q |
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|||||||||||||||||||||| | ||| | ||||||||||||||||||| | ||||||| |
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| T |
21945124 |
tactacacatgaatggaggcgtcgatgaagcaagctatgcaaacaactcctcacttcaggt |
21945064 |
T |
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