View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_12 (Length: 252)
Name: NF8683_low_12
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 36677340 - 36677102
Alignment:
| Q |
1 |
tgctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccg |
100 |
Q |
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| T |
36677340 |
tgctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccg |
36677241 |
T |
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| Q |
101 |
tgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcgcaaatg |
199 |
Q |
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| T |
36677240 |
tgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcgcaaatg |
36677141 |
T |
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| Q |
200 |
atgtaatgtaatggaaaattcaaatgaataagtgatgtc |
238 |
Q |
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| T |
36677140 |
atgtaatgtaatggaaaattcaaatgaataagtgatgtc |
36677102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 36687422 - 36687184
Alignment:
| Q |
1 |
tgctaaacaagtcgtttatgatcctattattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccg |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36687422 |
tgctaaacaagtcgtttatgatcctatgattttacaattattattgtgcttcaaatatatctactatctatctattaataatatcggtcttgttaacccg |
36687323 |
T |
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| Q |
101 |
tgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctttt-aagatgatatttcaagttacgattcgcaaatg |
199 |
Q |
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| T |
36687322 |
tgcacccagttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgcttttaaagatgatatttcaagttacgattcgcaaatg |
36687223 |
T |
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| Q |
200 |
atgtaatgtaatggaaaattcaaatgaataagtgatgtc |
238 |
Q |
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| T |
36687222 |
atgtaatgtaatggaaaattcaaatgaataagtgatgtc |
36687184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 36665304 - 36665431
Alignment:
| Q |
109 |
gttagttgttattatgtttaagtaaattgtataaggaatcttagattttgggtgctt-ttaagatgatatttcaagttacgattcgcaa--atg--atgt |
203 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||||||||| ||||||| ||| ||| |||| |
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| T |
36665304 |
gttagtggttattatgtttaagtaaattgtatatggaatcttagattttgagtgcttctaaagatcatatttcaagtcacgattcacaatgatgtaatgt |
36665403 |
T |
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| Q |
204 |
aatgtaatggaaaattcaaatgaataag |
231 |
Q |
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| T |
36665404 |
aatgtaatggaaaattcaaatgaataag |
36665431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 36664986 - 36665022
Alignment:
| Q |
29 |
attttacaattattattgtgcttcaaatatatctact |
65 |
Q |
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||||||||| |||||||||||||| |||||||||||| |
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| T |
36664986 |
attttacaactattattgtgcttcgaatatatctact |
36665022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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