View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_14 (Length: 250)
Name: NF8683_low_14
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_14 |
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| [»] scaffold0705 (1 HSPs) |
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Alignment Details
Target: scaffold0705 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0705
Description:
Target: scaffold0705; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7029 - 6790
Alignment:
| Q |
1 |
ttgtgtagtttgctttgaatacctatttaataatattaattggattgatatgtcaaaagcaaataccgtaactattaaggaaattgctatttttgttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
7029 |
ttgtgtagtttgctttgaatacctatttaataatattaattggattgatatgtcaaaagcaaatacaataactattaaggaaattgctatttctgttata |
6930 |
T |
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| Q |
101 |
attcaataatttgcaagttattggcttgattgactttcaaaattgtttttaaaagagatcagtactgacgcttgaatcaaaagagttttgattctgtctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6929 |
attcaataatttgcaagttattggcttgattgacttttaaaattgttttt--aagagatcagtactgacgcttgaatcaaaagagttttgattctgtctc |
6832 |
T |
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| Q |
201 |
gttttaaattgatatggtatcaatttgagatttctctctgct |
242 |
Q |
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| T |
6831 |
gttttaaattgatatggtatcaatttgagatttctctatgct |
6790 |
T |
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Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15355976 - 15355737
Alignment:
| Q |
1 |
ttgtgtagtttgctttgaatacctatttaataatattaattggattgatatgtcaaaagcaaataccgtaactattaaggaaattgctatttttgttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
15355976 |
ttgtgtagtttgctttgaatacctatttaataatattaattggattgatatgtcaaaagcaaatacaataactattaaggaaattgctatttctgttata |
15355877 |
T |
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| Q |
101 |
attcaataatttgcaagttattggcttgattgactttcaaaattgtttttaaaagagatcagtactgacgcttgaatcaaaagagttttgattctgtctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15355876 |
attcaataatttgcaagttattggcttgattgacttttaaaattgttttt--aagagatcagtactgacgcttgaatcaaaagagttttgattctgtctc |
15355779 |
T |
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| Q |
201 |
gttttaaattgatatggtatcaatttgagatttctctctgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15355778 |
gttttaaattgatatggtatcaatttgagatttctctatgct |
15355737 |
T |
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