View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_2 (Length: 533)
Name: NF8683_low_2
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 48 - 518
Target Start/End: Original strand, 1874813 - 1875284
Alignment:
| Q |
48 |
tcagaacagagatgtggaccaattagggttccacgtggtagaaacaatcaaattattgactctactatattgtccattgattcattgttgtttgataggg |
147 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1874813 |
tcagaacagagatgtggaccaattaggcttccacgtggtagaaacaatcaaattattgactctactatattgtccattgattcattgttgtttgataggg |
1874912 |
T |
|
| Q |
148 |
acaacacgacgaaatcacaggtgaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttcagtcgacgaaaatgc |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1874913 |
acaacacgacgaaatcacaggtgaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttctatcgacgaaaatgc |
1875012 |
T |
|
| Q |
248 |
atgcatttgtagaaaacaaaataatatgcattggacttcaaacataggagtgaataaaaaactacgagccactaaaaaagataagtctcataataagaaa |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875013 |
atgcatttgtagaaaacaaaataatatgcattggacttcaaacataggagtgaataaaaaactacgagccactaaaaaagataagtctcataataagaaa |
1875112 |
T |
|
| Q |
348 |
ggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatagcgccttaccattgga-ttttttgataatgatcaaggt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1875113 |
ggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatagcgccttaccattggatttttttgataatgatcaaggt |
1875212 |
T |
|
| Q |
447 |
tctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcgaccgccgtcggaaccacctgatgtc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875213 |
tctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcgaccgccgtcggaaccacctgatgtc |
1875284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 48 - 268
Target Start/End: Original strand, 1883795 - 1884009
Alignment:
| Q |
48 |
tcagaacagagatgtggaccaattagggttccacgtggtagaaacaatcaaattattgactctactatattgtccattgattcattgttgtttgataggg |
147 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| | |
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| T |
1883795 |
tcagaacagagatgtgaaccaattagggttccacgtggtggaaagaatcgaattattgactc--ctatgttgtccattgattcattgttgtttgatagcg |
1883892 |
T |
|
| Q |
148 |
acaacacgacgaaatcacaggtgaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttcagtcgacgaaaatgc |
247 |
Q |
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||||| |||||||||||||||||||||||||||| | |||||||||||||||||| | ||||| |||||||||||||| |||||| |||||||| |
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| T |
1883893 |
acaacgcgacgaaatcacaggtgaatgacataaccgtccatgaccagaacaacaaaaataataactctacggatagtattccttctagcgacgaaa---- |
1883988 |
T |
|
| Q |
248 |
atgcatttgtagaaaacaaaa |
268 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1883989 |
atgcatttgtagaaaacaaaa |
1884009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 341 - 493
Target Start/End: Original strand, 1885363 - 1885515
Alignment:
| Q |
341 |
taagaaaggatcagaagaatatggtgatggccaaacagctataccttctctttcaatttccactacatagcgccttaccattggattttttgataatgat |
440 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||| ||||||| |||| |||||||| |
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| T |
1885363 |
taagaaatgatcagaagaatatggtgatagccaaacagccataccttctctttcaatttccactacagagtgccttacaattggatatttttataatgat |
1885462 |
T |
|
| Q |
441 |
caaggttctctaaatgaaaatcctctcatgacgtttaactttagcgagtatcg |
493 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||||||| |||| || ||||| |
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| T |
1885463 |
caaggttctctaaatgacaatcctttcgtgacgtttaacattagtgattatcg |
1885515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 1884150 - 1884232
Alignment:
| Q |
264 |
caaaataatatgcattggacttcaaacataggagtgaataaaaaactacgagccactaaaaaagataagtctcataataagaaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1884150 |
caaaataatatgcattggacttcaaacataggagtgaataaaaaactacgagccactaaaaaa-ataagtctcataataagaaa |
1884232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 24840436 - 24840482
Alignment:
| Q |
58 |
gatgtggaccaattagggttccacgtggtagaaacaatcaaattatt |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24840436 |
gatgtggaccaattagggttccacttggtagaaacaatcaaactatt |
24840482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 3417815 - 3417914
Alignment:
| Q |
264 |
caaaataatatgcattggacttcaaacataggagtgaataaaaaactacgagccactaaaaaagataagtctcataataagaaaggatcagaagaatatg |
363 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||| |||||| |||||| ||||||||||| || |||||| ||| ||||||||||||||||||| |
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|
| T |
3417815 |
caaaataatatgcattggtcttctaacatgggagtgaatcaaaaaccacgagcaactaaaaaagagaaatctcatcatagaaaaggatcagaagaatatg |
3417914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 249
Target Start/End: Original strand, 3417467 - 3417546
Alignment:
| Q |
170 |
gaatgacataactgcccatgaccagaacaacaagattaatagctctacggatagtaatccttcagtcgacgaaaatgcat |
249 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| |||||||||||| || |||| |||||| | |||||||||||||| |
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| T |
3417467 |
gaatgacatagccgcccatgaccagaacaacaagaataatagctctacagacagtattccttctggcgacgaaaatgcat |
3417546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 28738175 - 28738219
Alignment:
| Q |
62 |
tggaccaattagggttccacgtggtagaaacaatcaaattattga |
106 |
Q |
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|
|||||||||||| |||||||||||| ||||||||||||| |||| |
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| T |
28738175 |
tggaccaattagagttccacgtggtgtaaacaatcaaatttttga |
28738219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 9868200 - 9868153
Alignment:
| Q |
61 |
gtggaccaattagggttccacgtggtagaaacaatcaaattattgact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9868200 |
gtggaccaattagggttccacgtggtagaaacaatcgaattattgact |
9868153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 21848778 - 21848722
Alignment:
| Q |
48 |
tcagaacag-agatgtggaccaattagggttccacgtggtagaaacaatcaaattattga |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21848778 |
tcagaacaggagatgtggaccaattagggttc---gtggtagaaacaatcaaattattga |
21848722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 9199045 - 9198996
Alignment:
| Q |
55 |
agagatgtggaccaattagggttccacgtggtagaaacaatcaaattatt |
104 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||||| ||||||| |
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|
| T |
9199045 |
agagaggtggaccgattagggttccacgtggtggaaacaattgaattatt |
9198996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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