View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_3 (Length: 499)
Name: NF8683_low_3
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 10084686 - 10085171
Alignment:
| Q |
14 |
atatgtaacactgaaatgaatttataaaatttggaggaccatggaacttgcatgtccctcttctccatccgcccatgcaaggaagctttggttagaggat |
113 |
Q |
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| T |
10084686 |
atatgtaacactgaaatgaatttataaaacttggaggaccatggaacttgcatgtccctcttctccatccgcccatgcaaggaagctttggttagaggat |
10084785 |
T |
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| Q |
114 |
ctaaaagaaatagtataatttttaataactccattgattttgtataactagtatttgattaattaagtttcactttcggtctcatattgtggcaaaatta |
213 |
Q |
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| T |
10084786 |
ctaaaagaaatagtataatttttaataactccattgattttgtataactagtatttgattaattaagtttcactttcggtctcatattgtggcaaaatta |
10084885 |
T |
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| Q |
214 |
ggagcttttggtttaccaattgtgtatttgcaagaccttattatattattccttagaaaagtaatggtgcttggtgagtcttacgctcaaacttttcaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10084886 |
ggagcttttggtttaccaattgtgtatttgcaagaccttattatattattccttagaaaagtaatggtgcttggtgagtcttacgctcaaacttttcaag |
10084985 |
T |
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| Q |
314 |
ctttatgtattgtagggtaaaaatgaagaaaggaaatgcaaaagcaagtgtaacattgattggcctaattatgggatctacataaagaatatgacaaaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10084986 |
ctttatgtattgtagggtaaaaatgaagaaaggaaatgcaaaagcaagtgtaacattgattggcctaattatgggatctacataaagaatatgacaaaag |
10085085 |
T |
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| Q |
414 |
tggtaaatgcagtcccaagttgttgattgttgttttttatagtcatattcatatatatcccacctacttacgagtgacactatgcc |
499 |
Q |
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| T |
10085086 |
tggtaaatgcagtcccaagttgttgattgttgttttttatagtcatattcatatatatcccacctacttacgagtgacactatgcc |
10085171 |
T |
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