View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_5 (Length: 355)
Name: NF8683_low_5
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 17576335 - 17576652
Alignment:
| Q |
19 |
aaataatgcaatagttatgaagaaaaataaaccccgaagtaaggtgggggatatcatcctttccatttccctttccccaaagccctcccttcccttttgc |
118 |
Q |
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| T |
17576335 |
aaataatgcaatagttatgaagaaaaataaaccccgaagtaaggtgggggatatcatcctttccatttccctttccccaaagccctcccttcccttttgc |
17576434 |
T |
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| Q |
119 |
t------------acaaagcctaaattgggccctccacgttaaagaagtggactcaactctaactctagtacatggcaaggtcacatgaagattctgtgg |
206 |
Q |
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| T |
17576435 |
tcctaattctcaaacaaagcctaaattgggccctccacgttaaagaagtggactcaactctaactctagtgcatggcaaggtcacatgaaaattctgtgg |
17576534 |
T |
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| Q |
207 |
actcaactctatctctagtacaggacaaggtcacatgaaagttatgtgtatgtatcacatacattaagtaagttggaccaatgtttggatcctctagagt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17576535 |
actcaactctatctctagtacaggacaaggtcacatgaaagttatgtgtatgtgtcacatacattaagtaagttggaccaatgtttggatcctctagtgt |
17576634 |
T |
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| Q |
307 |
agtttctctcttaattta |
324 |
Q |
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|||||||||||||||||| |
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| T |
17576635 |
agtttctctcttaattta |
17576652 |
T |
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