View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8683_low_7 (Length: 338)

Name: NF8683_low_7
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8683_low_7
NF8683_low_7
[»] chr3 (43 HSPs)
chr3 (128-256)||(13086554-13086683)
chr3 (257-310)||(46796039-46796092)
chr3 (128-256)||(14893083-14893211)
chr3 (128-256)||(13111722-13111852)
chr3 (257-320)||(49666040-49666103)
chr3 (128-257)||(14881252-14881381)
chr3 (257-310)||(45858364-45858417)
chr3 (128-257)||(13105574-13105705)
chr3 (147-254)||(37470141-37470248)
chr3 (130-257)||(4313532-4313661)
chr3 (257-310)||(1727678-1727731)
chr3 (257-310)||(2028740-2028793)
chr3 (257-310)||(40851414-40851467)
chr3 (141-256)||(23288071-23288187)
chr3 (130-256)||(261364-261493)
chr3 (128-256)||(21638496-21638626)
chr3 (257-320)||(30053902-30053964)
chr3 (128-256)||(19833445-19833574)
chr3 (257-310)||(13978174-13978227)
chr3 (140-256)||(15619696-15619812)
chr3 (128-256)||(14887978-14888106)
chr3 (257-304)||(37413077-37413125)
chr3 (140-257)||(15627043-15627160)
chr3 (128-258)||(13509349-13509481)
chr3 (199-256)||(16031267-16031324)
chr3 (257-312)||(21636313-21636365)
chr3 (257-320)||(22141196-22141256)
chr3 (140-256)||(30068626-30068743)
chr3 (213-256)||(15610511-15610554)
chr3 (257-310)||(46828522-46828572)
chr3 (147-256)||(14252400-14252510)
chr3 (174-256)||(18706267-18706348)
chr3 (258-310)||(21606495-21606544)
chr3 (150-256)||(49967354-49967460)
chr3 (257-320)||(15833845-15833905)
chr3 (223-256)||(33814600-33814633)
chr3 (147-256)||(43097561-43097670)
chr3 (199-256)||(48060738-48060795)
chr3 (223-259)||(5651856-5651892)
chr3 (213-257)||(15579461-15579505)
chr3 (258-304)||(21605305-21605348)
chr3 (257-311)||(24775155-24775206)
chr3 (141-257)||(30102402-30102518)
[»] scaffold0505 (1 HSPs)
scaffold0505 (128-256)||(11470-11599)
[»] chr1 (35 HSPs)
chr1 (128-256)||(20518281-20518409)
chr1 (128-256)||(39454381-39454509)
chr1 (257-315)||(48569781-48569839)
chr1 (128-256)||(35070035-35070165)
chr1 (147-256)||(13185783-13185892)
chr1 (142-256)||(16884518-16884633)
chr1 (257-320)||(21134730-21134793)
chr1 (257-311)||(23025215-23025269)
chr1 (128-257)||(1961637-1961766)
chr1 (258-310)||(10251438-10251490)
chr1 (258-310)||(30572621-30572673)
chr1 (128-256)||(18098375-18098505)
chr1 (257-315)||(19216053-19216111)
chr1 (257-311)||(21544470-21544524)
chr1 (257-311)||(37642696-37642750)
chr1 (257-310)||(21204505-21204558)
chr1 (128-256)||(13450035-13450163)
chr1 (130-216)||(20521299-20521386)
chr1 (257-300)||(21120654-21120697)
chr1 (128-245)||(1955829-1955946)
chr1 (130-256)||(20429353-20429481)
chr1 (257-310)||(21985025-21985078)
chr1 (258-310)||(42285075-42285127)
chr1 (258-310)||(46089434-46089486)
chr1 (147-257)||(2336013-2336123)
chr1 (199-257)||(19367474-19367532)
chr1 (259-304)||(21703286-21703331)
chr1 (142-256)||(22840098-22840214)
chr1 (257-311)||(44821119-44821170)
chr1 (128-256)||(44832491-44832621)
chr1 (223-260)||(22570926-22570963)
chr1 (257-320)||(7744635-7744695)
chr1 (128-211)||(19763275-19763359)
chr1 (212-256)||(22116372-22116416)
chr1 (257-312)||(34255081-34255137)
[»] chr4 (34 HSPs)
chr4 (128-256)||(15580418-15580547)
chr4 (128-234)||(15567773-15567880)
chr4 (150-247)||(3439635-3439731)
chr4 (257-320)||(15474752-15474815)
chr4 (128-256)||(20548381-20548510)
chr4 (129-256)||(25984369-25984497)
chr4 (257-311)||(3498149-3498203)
chr4 (257-304)||(3105068-3105115)
chr4 (257-304)||(9751162-9751209)
chr4 (128-256)||(19737944-19738074)
chr4 (257-312)||(39419349-39419404)
chr4 (130-256)||(50187783-50187912)
chr4 (257-310)||(1672860-1672912)
chr4 (257-310)||(1675335-1675387)
chr4 (147-256)||(22175794-22175903)
chr4 (257-310)||(22191288-22191341)
chr4 (142-257)||(39534174-39534290)
chr4 (257-304)||(40861123-40861169)
chr4 (182-256)||(55793220-55793294)
chr4 (141-256)||(4619220-4619333)
chr4 (141-256)||(4619886-4620001)
chr4 (257-310)||(38514321-38514375)
chr4 (257-310)||(17700404-17700457)
chr4 (199-256)||(20555005-20555062)
chr4 (257-310)||(20977877-20977930)
chr4 (142-257)||(16720727-16720842)
chr4 (257-310)||(16940414-16940464)
chr4 (223-257)||(15880077-15880111)
chr4 (257-310)||(17398292-17398343)
chr4 (212-257)||(3382466-3382511)
chr4 (147-256)||(14924997-14925106)
chr4 (257-316)||(55732240-55732296)
chr4 (212-256)||(3389214-3389258)
chr4 (212-256)||(39745442-39745486)
[»] scaffold0458 (1 HSPs)
scaffold0458 (128-256)||(9209-9337)
[»] chr6 (33 HSPs)
chr6 (147-258)||(22631692-22631803)
chr6 (142-256)||(21961607-21961720)
chr6 (142-256)||(20058788-20058903)
chr6 (142-257)||(20050925-20051041)
chr6 (257-320)||(19483230-19483293)
chr6 (257-310)||(12349419-12349472)
chr6 (128-256)||(12667472-12667603)
chr6 (142-258)||(19169104-19169221)
chr6 (140-256)||(18436710-18436826)
chr6 (257-312)||(20636181-20636236)
chr6 (258-312)||(26590081-26590135)
chr6 (257-310)||(19065696-19065749)
chr6 (128-256)||(28702822-28702953)
chr6 (257-310)||(17316194-17316247)
chr6 (147-256)||(22779096-22779205)
chr6 (199-258)||(18961005-18961064)
chr6 (257-311)||(33351585-33351639)
chr6 (220-257)||(1549202-1549239)
chr6 (147-256)||(15666221-15666330)
chr6 (199-258)||(10985083-10985142)
chr6 (141-256)||(19713680-19713797)
chr6 (199-257)||(20452666-20452724)
chr6 (223-257)||(24143598-24143632)
chr6 (204-257)||(12391056-12391109)
chr6 (223-260)||(16825644-16825681)
chr6 (257-320)||(16877668-16877728)
chr6 (212-257)||(19719835-19719880)
chr6 (223-256)||(24150088-24150121)
chr6 (257-311)||(12423677-12423728)
chr6 (200-256)||(20459468-20459524)
chr6 (279-311)||(22388085-22388117)
chr6 (128-188)||(22764828-22764888)
chr6 (212-256)||(26896467-26896511)
[»] chr8 (28 HSPs)
chr8 (142-256)||(24487866-24487981)
chr8 (142-257)||(6030847-6030961)
chr8 (257-315)||(22663596-22663654)
chr8 (128-256)||(22162922-22163052)
chr8 (257-311)||(6408164-6408218)
chr8 (257-311)||(43774332-43774386)
chr8 (257-311)||(45293055-45293109)
chr8 (257-310)||(14989110-14989163)
chr8 (257-310)||(22674243-22674296)
chr8 (128-256)||(14891799-14891927)
chr8 (257-312)||(1745600-1745655)
chr8 (259-309)||(18151315-18151365)
chr8 (128-257)||(22156921-22157044)
chr8 (140-257)||(20733159-20733276)
chr8 (257-310)||(21301462-21301515)
chr8 (257-310)||(43640238-43640291)
chr8 (257-310)||(45567514-45567567)
chr8 (258-310)||(33559898-33559950)
chr8 (257-320)||(21288843-21288906)
chr8 (128-256)||(15061271-15061401)
chr8 (140-258)||(20725196-20725314)
chr8 (140-258)||(20738094-20738212)
chr8 (257-320)||(15335688-15335748)
chr8 (257-320)||(15424753-15424813)
chr8 (257-320)||(15516057-15516117)
chr8 (128-216)||(24655278-24655366)
chr8 (257-310)||(40845026-40845076)
chr8 (141-192)||(13385747-13385799)
[»] chr2 (24 HSPs)
chr2 (142-257)||(21064685-21064799)
chr2 (128-256)||(20279269-20279397)
chr2 (257-310)||(1586639-1586692)
chr2 (141-256)||(12370403-12370519)
chr2 (128-256)||(18224-18354)
chr2 (257-304)||(3277439-3277486)
chr2 (142-256)||(22518913-22519028)
chr2 (257-312)||(31967647-31967702)
chr2 (257-310)||(14581902-14581955)
chr2 (257-301)||(22785384-22785428)
chr2 (258-310)||(40332530-40332582)
chr2 (128-256)||(36735333-36735463)
chr2 (257-311)||(22775910-22775964)
chr2 (257-311)||(22781288-22781342)
chr2 (257-310)||(44840872-44840925)
chr2 (142-256)||(45498926-45499040)
chr2 (257-310)||(28550525-28550578)
chr2 (257-320)||(28711306-28711366)
chr2 (257-312)||(34321503-34321555)
chr2 (257-311)||(33074690-33074741)
chr2 (141-257)||(18500225-18500343)
chr2 (128-256)||(11873682-11873814)
chr2 (128-257)||(45489267-45489396)
chr2 (199-256)||(38084476-38084533)
[»] scaffold0441 (1 HSPs)
scaffold0441 (142-256)||(2471-2584)
[»] scaffold0069 (1 HSPs)
scaffold0069 (257-320)||(4940-5003)
[»] scaffold0414 (1 HSPs)
scaffold0414 (258-320)||(6731-6793)
[»] scaffold0249 (1 HSPs)
scaffold0249 (257-315)||(17371-17429)
[»] chr5 (37 HSPs)
chr5 (257-311)||(29138042-29138096)
chr5 (257-320)||(21660672-21660735)
chr5 (257-311)||(30115524-30115578)
chr5 (128-256)||(40014876-40015005)
chr5 (257-312)||(9089362-9089417)
chr5 (128-256)||(20099585-20099715)
chr5 (128-257)||(37048343-37048472)
chr5 (128-256)||(36448249-36448379)
chr5 (130-256)||(22704486-22704612)
chr5 (128-256)||(15956916-15957047)
chr5 (128-257)||(20092688-20092819)
chr5 (258-310)||(28463980-28464032)
chr5 (128-257)||(36454626-36454757)
chr5 (257-312)||(35985869-35985924)
chr5 (257-311)||(32161246-32161300)
chr5 (257-311)||(35931645-35931699)
chr5 (257-312)||(3245072-3245126)
chr5 (257-320)||(5430310-5430370)
chr5 (257-316)||(14086187-14086243)
chr5 (128-256)||(23378237-23378366)
chr5 (258-310)||(10849219-10849270)
chr5 (258-310)||(25929813-25929864)
chr5 (202-257)||(25677874-25677929)
chr5 (223-258)||(26553298-26553333)
chr5 (182-257)||(29901228-29901303)
chr5 (199-257)||(20639871-20639929)
chr5 (223-257)||(21696071-21696105)
chr5 (223-256)||(21688153-21688186)
chr5 (212-257)||(25526187-25526232)
chr5 (257-320)||(30743461-30743521)
chr5 (220-257)||(36371318-36371355)
chr5 (220-257)||(36385246-36385283)
chr5 (220-257)||(36995981-36996018)
chr5 (220-257)||(37009919-37009956)
chr5 (257-311)||(42244146-42244196)
chr5 (225-257)||(23577474-23577506)
chr5 (257-311)||(31118308-31118359)
[»] scaffold0027 (1 HSPs)
scaffold0027 (128-256)||(23583-23712)
[»] scaffold0177 (1 HSPs)
scaffold0177 (257-320)||(19982-20045)
[»] scaffold0056 (2 HSPs)
scaffold0056 (257-315)||(34410-34468)
scaffold0056 (257-310)||(25261-25314)
[»] chr7 (24 HSPs)
chr7 (141-257)||(15683151-15683266)
chr7 (257-311)||(19338915-19338969)
chr7 (257-310)||(5826416-5826469)
chr7 (257-310)||(14425872-14425925)
chr7 (257-312)||(24794393-24794448)
chr7 (128-254)||(43906101-43906228)
chr7 (257-310)||(27872146-27872199)
chr7 (257-310)||(8183398-8183450)
chr7 (257-304)||(21381113-21381160)
chr7 (257-304)||(32264385-32264432)
chr7 (264-311)||(48805522-48805569)
chr7 (199-257)||(34132830-34132888)
chr7 (220-257)||(15767136-15767173)
chr7 (257-315)||(332099-332154)
chr7 (128-256)||(1858501-1858632)
chr7 (137-256)||(8913403-8913523)
chr7 (258-301)||(1293343-1293386)
chr7 (212-258)||(13270908-13270954)
chr7 (223-257)||(42631291-42631325)
chr7 (220-257)||(16388564-16388601)
chr7 (257-315)||(2265185-2265240)
chr7 (220-256)||(16402675-16402711)
chr7 (225-257)||(17016388-17016420)
chr7 (257-315)||(48236591-48236646)
[»] scaffold0473 (2 HSPs)
scaffold0473 (257-320)||(2321-2384)
scaffold0473 (141-256)||(9113-9228)
[»] scaffold0217 (1 HSPs)
scaffold0217 (257-311)||(10017-10071)
[»] scaffold0151 (1 HSPs)
scaffold0151 (257-315)||(11848-11906)
[»] scaffold1359 (1 HSPs)
scaffold1359 (257-310)||(1384-1437)
[»] scaffold0045 (1 HSPs)
scaffold0045 (257-310)||(87205-87258)
[»] scaffold0035 (1 HSPs)
scaffold0035 (257-310)||(98780-98833)
[»] scaffold0032 (1 HSPs)
scaffold0032 (147-259)||(29068-29181)
[»] scaffold0378 (3 HSPs)
scaffold0378 (142-257)||(769-885)
scaffold0378 (142-256)||(3336-3451)
scaffold0378 (142-256)||(15816-15931)
[»] scaffold0323 (1 HSPs)
scaffold0323 (141-261)||(17669-17789)
[»] scaffold0176 (1 HSPs)
scaffold0176 (260-320)||(9639-9699)
[»] scaffold0167 (1 HSPs)
scaffold0167 (128-256)||(7980-8108)
[»] scaffold0607 (1 HSPs)
scaffold0607 (257-320)||(7368-7431)
[»] scaffold0211 (1 HSPs)
scaffold0211 (257-320)||(15182-15245)
[»] scaffold0101 (1 HSPs)
scaffold0101 (142-256)||(16488-16603)
[»] scaffold0050 (2 HSPs)
scaffold0050 (142-256)||(41215-41330)
scaffold0050 (199-256)||(27724-27781)
[»] scaffold0029 (1 HSPs)
scaffold0029 (147-258)||(38029-38140)
[»] scaffold0067 (1 HSPs)
scaffold0067 (141-211)||(44542-44612)
[»] scaffold0275 (1 HSPs)
scaffold0275 (257-310)||(8728-8781)
[»] scaffold0527 (2 HSPs)
scaffold0527 (258-310)||(325-377)
scaffold0527 (258-310)||(8388-8440)
[»] scaffold0207 (2 HSPs)
scaffold0207 (257-320)||(21092-21156)
scaffold0207 (257-304)||(11192-11240)
[»] scaffold0028 (2 HSPs)
scaffold0028 (139-256)||(65838-65957)
scaffold0028 (257-315)||(5213-5268)
[»] scaffold0001 (2 HSPs)
scaffold0001 (128-210)||(4803-4886)
scaffold0001 (199-256)||(96782-96839)
[»] scaffold0216 (1 HSPs)
scaffold0216 (257-310)||(29866-29919)
[»] scaffold0085 (1 HSPs)
scaffold0085 (199-256)||(7807-7864)
[»] scaffold0605 (1 HSPs)
scaffold0605 (182-257)||(9329-9404)
[»] scaffold0351 (1 HSPs)
scaffold0351 (141-256)||(7591-7706)
[»] scaffold0352 (1 HSPs)
scaffold0352 (257-310)||(432-485)
[»] scaffold0290 (1 HSPs)
scaffold0290 (199-256)||(22046-22103)
[»] scaffold0269 (1 HSPs)
scaffold0269 (257-320)||(7762-7822)
[»] scaffold0094 (2 HSPs)
scaffold0094 (220-257)||(41694-41731)
scaffold0094 (223-257)||(30732-30766)
[»] scaffold0016 (1 HSPs)
scaffold0016 (128-256)||(14099-14228)
[»] scaffold0507 (1 HSPs)
scaffold0507 (220-256)||(11035-11071)
[»] scaffold1922 (1 HSPs)
scaffold1922 (128-256)||(151-281)
[»] scaffold0435 (1 HSPs)
scaffold0435 (202-257)||(8384-8439)
[»] scaffold0011 (2 HSPs)
scaffold0011 (257-320)||(134988-135050)
scaffold0011 (257-311)||(65030-65083)
[»] scaffold1888 (1 HSPs)
scaffold1888 (174-256)||(1033-1115)
[»] scaffold0815 (1 HSPs)
scaffold0815 (128-257)||(4978-5107)
[»] scaffold0503 (2 HSPs)
scaffold0503 (142-257)||(1866-1983)
scaffold0503 (142-257)||(6433-6550)
[»] scaffold0068 (2 HSPs)
scaffold0068 (223-257)||(17805-17839)
scaffold0068 (223-256)||(25724-25757)
[»] scaffold0039 (1 HSPs)
scaffold0039 (128-254)||(89808-89937)
[»] scaffold0014 (1 HSPs)
scaffold0014 (147-257)||(3765-3875)
[»] scaffold1088 (1 HSPs)
scaffold1088 (277-310)||(1-34)
[»] scaffold0488 (1 HSPs)
scaffold0488 (259-310)||(11212-11260)
[»] scaffold0150 (1 HSPs)
scaffold0150 (199-256)||(38607-38664)
[»] scaffold0107 (1 HSPs)
scaffold0107 (199-256)||(1456-1513)
[»] scaffold1719 (1 HSPs)
scaffold1719 (223-259)||(23-59)
[»] scaffold0925 (1 HSPs)
scaffold0925 (279-311)||(1384-1416)
[»] scaffold0183 (1 HSPs)
scaffold0183 (147-256)||(20679-20790)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 13086683 - 13086554
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgattttt-cattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  13086683 ccgactcggattcaaaaaggaggtattttaaaatacctctttgtcgattttttcattgaaaagtcagggactgatcagggtcaaatgacatgtgttagtg 13086584  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||||||||| ||||||||    
T  13086583 ggaccttaggtcaaaaattggggtatgaca 13086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 46796092 - 46796039
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46796092 gttatcatcaaaactcttaagggttattattgctaaacacattttgttccaaca 46796039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 14893083 - 14893211
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || ||| |||| | |||||| |||  ||  |||||| ||||| ||||||| || |||||    
T  14893083 ccgactcggaatcaaaaatgaggtattttaaaatacctccatgccgaatttttactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtgg 14893182  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    | |||||||||||||||||| ||||||||    
T  14893183 ggccttaggtcaaaaattggggtatgaca 14893211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 13111722 - 13111852
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  13111722 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 13111821  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  13111822 ggggccttaggtcaaaaattggggtatgaca 13111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 49666103 - 49666040
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||    
T  49666103 gttatcatcaaaactcttaaggattatttttgctaaacacattttgttccaacaatctccccct 49666040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 14881252 - 14881381
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || ||| | || |||||||| |||  ||  |||||| ||||| ||||||| ||  ||||    
T  14881252 ccgactcggaatcaaaaatgaggtattttaaaatacctccatgccgaatatttattgaaaaatcagagatcgatcagagtcaagtgacatgtgtcggtgg 14881351  T
Q  228 gaccttaggtcaaaaattggagtatgacag 257  Q
    | |||||||||||||||||| |||||||||    
T  14881352 ggccttaggtcaaaaattggggtatgacag 14881381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 45858417 - 45858364
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  45858417 gttatcttcaaaactcttaagggttattattgctaaacacattttgttccaaca 45858364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 13105574 - 13105705
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  13105574 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 13105673  T
Q  226 gggaccttaggtcaaaaattggagtatgacag 257  Q
    ||| |||||||||||||||| | |||||||||    
T  13105674 ggggccttaggtcaaaaattagggtatgacag 13105705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 37470248 - 37470141
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||| || ||| ||||  |||||| || || | | |||||||||||| ||||| | ||||||||| |||||||||||||||||    
T  37470248 gaggtattttaaaatacctctctgccgaatttttcttgaaatgttaaagtccgatcagggtcaagtgacacgtgttagtggggccttaggtcaaaaattg 37470149  T
Q  247 gagtatga 254  Q
    | ||||||    
T  37470148 gggtatga 37470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 257
Target Start/End: Original strand, 4313532 - 4313661
Alignment:
Q  130 gactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||| | ||||||| ||||||||||||||||| ||  ||||||  ||||||| |||||| | |  ||  |||||| ||||| ||||||| || |||||    
T  4313532 gactcgaaatcaaaaatgaggtattttaaaatacctccctgtcgaattttttcactgaaaaattagagatcgatcagagtcaagtgacatgtgtcagtgg 4313631  T
Q  228 gaccttaggtcaaaaattggagtatgacag 257  Q
    | |||||||||||||||||| |||||||||    
T  4313632 ggccttaggtcaaaaattggggtatgacag 4313661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 1727731 - 1727678
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  1727731 gttatcatcaaaactcttaaggattattattgctaaacaaattttgttccaaca 1727678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 2028740 - 2028793
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  2028740 gttatcatcaaaactcttaaggattattattgctaaacacgttttgttccaaca 2028793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 40851414 - 40851467
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  40851414 gttatcatcaaaactcttaaggattattattgctagacacattttgttccaaca 40851467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 23288071 - 23288187
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    ||||| ||||||||||||||||| ||  || ||| ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||||| ||||||||||    
T  23288071 aaaaatgaggtattttaaaatacctccctgccgaatttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtaagtggggccttaggtca 23288170  T
Q  240 aaaattggagtatgaca 256  Q
    |||||||| ||||||||    
T  23288171 aaaattggggtatgaca 23288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 261493 - 261364
Alignment:
Q  130 gactcggattcaaaaaggaggtattttaaaatacttctttgtcga---tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||| | ||||| ||||||||||||||||| ||  || | |   ||||||| |||||| |||| ||  |||||| ||||| ||||||| || ||||    
T  261493 gactcggaattaaaaatgaggtattttaaaatacctccctgccaaatttttttcactgaaaaatcaaagatcgatcagagtcaagtgacatgtgtcagtg 261394  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||| ||||||||    
T  261393 gggccttaggtcaaaaattggggtatgaca 261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 21638496 - 21638626
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| | ||||| || |||||||||||||  ||| || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  21638496 ccgactcggaataaaaaatgaagtattttaaaataactctctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 21638595  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  21638596 ggggccttaggtcaaaaattggggtatgaca 21638626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 30053964 - 30053902
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  30053964 gttataatcaaaa-tcttaaggattattattgctaaacacattttgttccaacaatctccccct 30053902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 19833574 - 19833445
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcgat-ttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    ||||||||||||||||||  ||||||||||||||||| ||  ||||||| ||||  |||||| |||| |||||||||||||||||| | | |  |   ||    
T  19833574 ccgactcggattcaaaaaatgaggtattttaaaatacctccctgtcgatttttttgttgaaatgtcagggactgatcagggtcaaaaggcgtatgaatgt 19833475  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
     ||||||||||||||||||||| ||||||||    
T  19833474 -ggaccttaggtcaaaaattggggtatgaca 19833445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 13978174 - 13978227
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  13978174 gttatcttcaaaacttttaggggttattattgctaaacacattttgttccaaca 13978227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 15619812 - 15619696
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtc 238  Q
    |||||| ||||||||||||||||| ||| || ||| ||||||||||||| ||||  ||||||||| ||||||| | |||  |   || ||||||||||||    
T  15619812 caaaaatgaggtattttaaaatacctctctgccgaatttttcattgaaatgtcagagactgatcaaggtcaaaaggcatatgaatgt-ggaccttaggtc 15619714  T
Q  239 aaaaattggagtatgaca 256  Q
    ||||||||| ||||||||    
T  15619713 aaaaattggggtatgaca 15619696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 14887978 - 14888106
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    ||||||||||  |||||| ||| ||||||||||||| ||| ||  || |||| | |||||| |||  ||  |||||| ||||| ||||||| || |||||    
T  14887978 ccgactcggagccaaaaatgagatattttaaaatacctctctgctgaatttttactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtgg 14888077  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
      |||||||||||||||||| ||||||||    
T  14888078 agccttaggtcaaaaattggggtatgaca 14888106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 37413077 - 37413125
Alignment:
Q  257 gttatcatcaaaactcttaagggtta-ttattgctaaacacattttgtt 304  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  37413077 gttatcatcaaaactcttaaggtttatttattgctaaacacattttgtt 37413125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 15627160 - 15627043
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtc 238  Q
    |||||| ||||||||||||||||| ||| || ||| ||||||||||||| ||||  ||||||||| ||||||| | |||  |   || |||||||||||     
T  15627160 caaaaatgaggtattttaaaatacctctctgccgaatttttcattgaaatgtcagagactgatcaaggtcaaaaggcatatgaatgt-ggaccttaggta 15627062  T
Q  239 aaaaattggagtatgacag 257  Q
    ||||||||| |||||||||    
T  15627061 aaaaattggggtatgacag 15627043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 258
Target Start/End: Original strand, 13509349 - 13509481
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattg--aaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||| ||||| ||||||| ||||||||||||||||||||| || |||  ||| | ||  ||||  ||  ||  |||||| ||||||||||  |||| |||    
T  13509349 ccgattcggaatcaaaaatgaggtattttaaaatacttctctgccgaacttttactggaaaaaaacagagatcgatcagagtcaaatgacgcgcgtcagt 13509448  T
Q  226 gggaccttaggtcaaaaattggagtatgacagt 258  Q
    ||||||||||||||||| || | ||||||||||    
T  13509449 gggaccttaggtcaaaatttagggtatgacagt 13509481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 16031267 - 16031324
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| ||||||||    
T  16031267 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 16031324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 21636365 - 21636313
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    ||||||||||||||||||||| ||||||   |||||||| ||||||||||||||||    
T  21636365 gttatcatcaaaactcttaagagttatt---gctaaacagattttgtttcaacaat 21636313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 22141196 - 22141256
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| |||||||||| ||||    
T  22141196 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaatctccccct 22141256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 30068626 - 30068743
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcgatttttcattg-aaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtc 238  Q
    |||||| ||||||||||||||||| ||| || ||| |||||| || |||| |||| ||  |||||| ||||| ||||  || | ||||||||||||||||    
T  30068626 caaaaatgaggtattttaaaatacctctctgccgaattttcactgaaaaaatcaaagatcgatcagagtcaagtgacgcgcatcagtgggaccttaggtc 30068725  T
Q  239 aaaaattggagtatgaca 256  Q
    |||| || | ||||||||    
T  30068726 aaaatttagggtatgaca 30068743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 15610511 - 15610554
Alignment:
Q  213 gacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||    
T  15610511 gacacgcgtcagtgggaccttaggtcaaaaattggggtatgaca 15610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 46828522 - 46828572
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||| |||||||   |||||||||||||||||||||| |||||    
T  46828522 gttatcatcaaaacttttaaggg---ttattgctaaacacattttgttccaaca 46828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 14252510 - 14252400
Alignment:
Q  147 gaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaatt 245  Q
    ||||||||||||||||| ||| || ||| ||||||| |||||| |||  || |||| ||||| |||  || || || | |||||||||||||||||||||    
T  14252510 gaggtattttaaaatacctctctgccgaatttttcactgaaaaatcagagattgattagggttaaacaacgtgtgtcaatgggaccttaggtcaaaaatt 14252411  T
Q  246 ggagtatgaca 256  Q
     | ||||||||    
T  14252410 agggtatgaca 14252400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 18706348 - 18706267
Alignment:
Q  174 atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||||| ||| || ||| ||| |||||||| | ||| |||| | || ||||||||||||||||||||||||| ||||||||    
T  18706348 atttttcactgagaaatcagggattgatcaggtt-aaacgacacgtgtcagtgggaccttaggtcaaaaattggggtatgaca 18706267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 21606495 - 21606544
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||| |||||   |||||||||||||||||| |||||    
T  21606495 ttatcatcaaaactcttaagagttat---tgctaaacacattttgttccaaca 21606544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 49967460 - 49967354
Alignment:
Q  150 gtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggag 249  Q
    |||||||||||||| ||| || ||| ||||  |||||| || || |   |||||||||||| ||||| | || |||||| |||||||||||||||| | |    
T  49967460 gtattttaaaatacctctctgccgaatttttcttgaaatgttaaagttcgatcagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattaggg 49967361  T
Q  250 tatgaca 256  Q
    |||||||    
T  49967360 tatgaca 49967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 15833845 - 15833905
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||||||||||||||| |||| ||||| ||   |||||||||||||| |||||||||| ||||    
T  15833845 gttatcatcaaaactctaaaggtttattgtt---aaacacattttgttccaacaatctccccct 15833905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 33814600 - 33814633
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||||||||||||| ||||||||    
T  33814600 agtgggaccttaggtcaaaaattggggtatgaca 33814633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 43097670 - 43097561
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||  || | | |||| | |||||||| |  || |||||| ||| ||| |||| | || |||||||||||| |||||||||||    
T  43097670 gaggtattttaaaatacctccctgcctaatttttactgaaaagttagagattgatcatggttaaacgacacgtgtcagtgggaccttaagtcaaaaattg 43097571  T
Q  247 gagtatgaca 256  Q
    | ||||||||    
T  43097570 gggtatgaca 43097561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 48060738 - 48060795
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||||| ||||||| || |||| | |||||||||||||||||| ||||||||    
T  48060738 gatcagagtcaagtgacatgtgtcagtgaggccttaggtcaaaaattggggtatgaca 48060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 5651856 - 5651892
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacagtt 259  Q
    |||||||||||||||||||| |||| |||||||||||    
T  5651856 agtgggaccttaggtcaaaatttggggtatgacagtt 5651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 15579461 - 15579505
Alignment:
Q  213 gacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||| |||| ||||||||||||||||||||| ||| |||||||||    
T  15579461 gacacgcgtcagtgggaccttaggtcaaaaactggggtatgacag 15579505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 21605348 - 21605305
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    |||||||||||||||||||| |   ||||||||||||||||||||||    
T  21605348 ttatcatcaaaactcttaagag---ttattgctaaacacattttgtt 21605305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 24775206 - 24775155
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| ||||||    
T  24775206 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaa 24775155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 30102402 - 30102518
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    ||||| ||||||||||||||||| ||| || ||| |||| | || ||| |||  ||  |||||| ||||| |||||||  | |||||| ||||| |||||    
T  30102402 aaaaatgaggtattttaaaatacctctctgccgaatttttactggaaaatcagagatcgatcagagtcaagtgacatgtatcagtggggccttaagtcaa 30102501  T
Q  241 aaattggagtatgacag 257  Q
    |||||||  ||||||||    
T  30102502 aaattgggatatgacag 30102518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 11599 - 11470
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgattttt-cattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  11599 ccgactcggattcaaaaaggaggtattttaaaatacctctttgtcgattttttcattgaaaagtcagggactgatcagggtcaaatgacatgtgttagtg 11500  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||| ||||||||    
T  11499 ggtccttaggtcaaaaattggggtatgaca 11470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 20518409 - 20518281
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||||||||||| ||||||||||||||||  | |||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||    
T  20518409 ccgactcggattcaaaaatgaggtattttaaaatatctatttgccgatttttccttgaaaagtcagggactgatcatggtcaaatgacatgcgttagtgg 20518310  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    || ||||||||||||||||| ||||||||    
T  20518309 gatcttaggtcaaaaattggggtatgaca 20518281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 39454509 - 39454381
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatac-ttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||||||||||| ||||||||||||| ||| ||| | |  |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  39454509 ccgactcggattcaaaaatgaggtattttaaagtaccttcataga-gatttttcattgaaaagttagggactgatcagggtcaaatgacatgcgtcagtg 39454411  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
     |||||||||||||||||||| ||||||||    
T  39454410 tgaccttaggtcaaaaattggggtatgaca 39454381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 48569839 - 48569781
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48569839 gttatcatcaaaactcttaagggttattattgctaaacacattttgttccaacaatctc 48569781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 35070165 - 35070035
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| | ||||| ||||||||||||||||| |||||| |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  35070165 ccgactcggaataaaaaatgaggtattttaaaatacctctttgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 35070066  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  35070065 ggggccttaggtcaaaaattggggtatgaca 35070035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 13185892 - 13185783
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||  ||| || ||| ||||||||||||| |||  || |||||||||| ||| |||||| ||  |||| ||||||||||||||||||    
T  13185892 gaggtattttaaaatatctctctgccgaattttcattgaaaaatcagagattgatcagggttaaacgacatgtgtcggtggaaccttaggtcaaaaattg 13185793  T
Q  247 gagtatgaca 256  Q
    ||||||||||    
T  13185792 gagtatgaca 13185783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 16884633 - 16884518
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||||| |||| ||| ||||||| |||||| ||| ||| |||||||||| | | |||| | || |||||| |||||||||||    
T  16884633 aaaatgaggtattttaaaatacttttttgccgaatttttcactgaaaaatcatggattgatcagggttagacgacacgtgtcagtggggccttaggtcaa 16884534  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  16884533 aaattggggtatgaca 16884518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 21134793 - 21134730
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| ||||    
T  21134793 gttatcatcaaaactcttaagggttattattgctaaataaattttgttccaacaatctccccct 21134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 23025215 - 23025269
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  23025215 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaacaa 23025269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 1961766 - 1961637
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| | ||||| ||||||||||||||||| |||||| | | |||||| |||||| |||  ||  |||||| ||||| ||  ||| || |||||    
T  1961766 ccgactcggaataaaaaatgaggtattttaaaatacctctttgccaaattttcactgaaaaatcagagatcgatcagagtcaagtgttatgtgtcagtgg 1961667  T
Q  228 gaccttaggtcaaaaattggagtatgacag 257  Q
    | |||||||||||||||||| |||||||||    
T  1961666 ggccttaggtcaaaaattggggtatgacag 1961637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 10251438 - 10251490
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  10251438 ttatcatcaaatctcttaagggttattattgctaaacacattttgttccaaca 10251490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 30572621 - 30572673
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  30572621 ttatcatcaaaactcttaaggattattattgctaaacacattttgttccaaca 30572673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 18098505 - 18098375
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| | ||||| ||||||||||||||||| ||  ||||||  |||| || |||||| |||  ||  |||||| ||||| ||||||| ||||||    
T  18098505 ccgactcggaataaaaaatgaggtattttaaaatacctccatgtcgaatttttccactgaaaaatcagagatcgatcagagtcaagtgacatgtgttagt 18098406  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||| ||||||||| ||||||||    
T  18098405 ggggccttaggttaaaaattggggtatgaca 18098375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 19216053 - 19216111
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||    
T  19216053 gttatcatcaaaactcttaaggattattattgttaaacacattttgttccaacactctc 19216111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 21544470 - 21544524
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  21544470 gttatcttcaaaacttttaagggttattattgctaaacacattttgttccaacaa 21544524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 37642696 - 37642750
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  37642696 gttatcttcaaaactcttaagggttaatattgctaaacacattttgttccaacaa 37642750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 21204558 - 21204505
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  21204558 gttatcatcaaaactcttaagggttattattgccaaacaaattttgttccaaca 21204505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 13450163 - 13450035
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || ||| |||||| | |||| |||  ||  |||| | ||||||||||  |||| |||||    
T  13450163 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaattttcactaaaaaatcagagatcgatccgagtcaaatgacgcgcgtcagtgg 13450064  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||| || | ||||||||    
T  13450063 gaccttaggtcaaaatttagggtatgaca 13450035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 20521299 - 20521386
Alignment:
Q  130 gactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgaca 216  Q
    |||||||||| ||||| ||||||||||||||||| | | || ||| ||||||| ||||||| || |||||||||||| ||||||||||    
T  20521299 gactcggatttaaaaatgaggtattttaaaatacctttatgccgaatttttcactgaaaagacagggactgatcaggatcaaatgaca 20521386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 21120697 - 21120654
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattt 300  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  21120697 gttatcatcaaaactcttaagggttattattgctaaacaaattt 21120654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 1955946 - 1955829
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||||| ||||||||||||||||| |||||  | | |||||| |||||| |||  ||  |||||| ||||| ||| | | || |||||    
T  1955946 ccgactcggaatcaaaaatgaggtattttaaaatacctctttaccaaattttcactgaaaaatcagagatcgatcagagtcaagtgatacgtgtcagtgg 1955847  T
Q  228 gaccttaggtcaaaaatt 245  Q
    | ||||||||||||||||    
T  1955846 ggccttaggtcaaaaatt 1955829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 20429481 - 20429353
Alignment:
Q  130 gactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcat--tgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||| ||||||| ||||||||||||||||| ||  || ||||||||  |  |||| | |||  ||  |||||| ||||| ||||| | || |||||    
T  20429481 gactcggaatcaaaaatgaggtattttaaaatacctccctgccgattttttttactgaataatcagagatcgatcagagtcaagtgacaagtgtcagtgg 20429382  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    |||||||||||||||||||| ||||||||    
T  20429381 gaccttaggtcaaaaattggggtatgaca 20429353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 21985025 - 21985078
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||| |||||    
T  21985025 gttatcatcataactcttaagggttattattgctaatcaaattttgttccaaca 21985078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 42285075 - 42285127
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| || |||||    
T  42285075 ttatcatcaaaactctcaagggttattattgctaaacaaattttattccaaca 42285127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 46089434 - 46089486
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||| |||||    
T  46089434 ttatcatcaaaactcttaaggattattattgctaaacattttttgttccaaca 46089486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 2336013 - 2336123
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||| |||||| ||||  |||| | || || |   || || |||||| ||||||| || |||||| |||||||||||||||||    
T  2336013 gaggtattttaaaatacctctctgtcgaatttttcttgagatgttaaagttcgaccacggtcaagtgacatgtgtcagtggggccttaggtcaaaaattg 2336112  T
Q  247 gagtatgacag 257  Q
    | |||||||||    
T  2336113 gggtatgacag 2336123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 19367532 - 19367474
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| |||||||||    
T  19367532 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 19367474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 21703286 - 21703331
Alignment:
Q  259 tatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  21703286 tatcatcaaaactcttagggatcattattgctaaacacattttgtt 21703331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 22840098 - 22840214
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaagga--ctgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||| ||||||||||||||||| |  ||| ||| |||| | ||||| ||||  ||  ||||||||||| ||| |||  | || |||||||||||||||||    
T  22840098 aaaatgaggtattttaaaataccttcttgccgaatttttactgaaacgtcagagactctgatcagggttaaacgacgcgtgtcagtgggaccttaggtca 22840197  T
Q  240 aaaattggagtatgaca 256  Q
    |||||||| ||||||||    
T  22840198 aaaattggggtatgaca 22840214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 44821170 - 44821119
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||| ||||||   ||||||||||||||||| ||||||    
T  44821170 gttatcatcaaaactcttaagtgttatt---gctaaacacattttgttccaacaa 44821119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 44832491 - 44832621
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| | ||||| ||||||||||||||||| || ||| |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  44832491 ccgactcggaataaaaaatgaggtattttaaaatacctccttgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 44832590  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    |   |||||||| |||||||||  |||||||    
T  44832591 gaagccttaggttaaaaattgggatatgaca 44832621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 22570926 - 22570963
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacagtta 260  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  22570926 agtgggaccttaggtcaaaatttggggtatgacagtta 22570963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 7744695 - 7744635
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||||||||||||||||| |||||  ||||| ||| ||||||||||| |||||||||| ||||    
T  7744695 gttatcatcaaaactctta-gggtt--tattgttaatcacattttgttccaacaatctccccct 7744635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 19763275 - 19763359
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtcaaggactgatcagggtcaaa 211  Q
    ||||||||||  | |||| ||||||||||||||||| | | || || |||||||| |||||||||| |||||||| ||| |||||    
T  19763275 ccgactcggaaccgaaaatgaggtattttaaaatacctatctgccgaatttttcactgaaaagtcagggactgattaggatcaaa 19763359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 22116372 - 22116416
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||    
T  22116372 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 22116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 34255137 - 34255081
Alignment:
Q  257 gttatcatcaaaactcttaagggtta-ttattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||| ||| |||||||| |||  |||||||| |||||||    
T  34255137 gttatcatcaaaactcttaaggattagttattgctgaaccaattttgttccaacaat 34255081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 15580418 - 15580547
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    ||||||| ||||||||||  ||||||||||||||||| ||  || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15580418 ccgactctgattcaaaaaatgaggtattttaaaatacctccctgccgatttttcattgaaaagtcagggactgatcagggtcaaatgacatgcgtcagtg 15580517  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| ||||||||||||||||| ||||||||    
T  15580518 ggatcttaggtcaaaaattggggtatgaca 15580547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 15567773 - 15567880
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    ||||||| ||||||||||  ||||||||||||||||| ||  || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15567773 ccgactctgattcaaaaaatgaggtattttaaaatacctccctgccgatttttcattgaaaagtcagggactgatcagggtcaaatgacatgcgtcagtg 15567872  T
Q  227 ggacctta 234  Q
    ||| ||||    
T  15567873 ggatctta 15567880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 3439731 - 3439635
Alignment:
Q  150 gtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattgg 247  Q
    |||||||||||||| ||  |||||  |||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  3439731 gtattttaaaatacctcactgtcggatttt-attgaaaagtcagggactgatcagtgtcaaatgacatgcgtcagtgggaccttaggtcaaaaattgg 3439635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15474815 - 15474752
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  15474815 gttatcttcaaaactcttaagggttattattgctaaacacattttgttccaacaatctccccct 15474752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 20548510 - 20548381
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| | ||||| ||||||||||||||||| ||  |||||| ||||||| |||||| |||  ||  |||||| ||||| ||||||| || ||||    
T  20548510 ccgactcggaataaaaaatgaggtattttaaaatacctccctgtcgaatttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtg 20548411  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||| ||||||||    
T  20548410 gggccttaggtcaaaaattggggtatgaca 20548381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 25984497 - 25984369
Alignment:
Q  129 cgactcggattcaaaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    ||||||||| ||||| | ||||||||||||||||| ||||||||| |||||||| |||||| |||  ||   ||||| |||||| |||| | || |||||    
T  25984497 cgactcggaatcaaacatgaggtattttaaaatacctctttgtcgaatttttcactgaaaaatcagagatcaatcagcgtcaaacgacacgtgtcagtgg 25984398  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    |||||||||| ||||||||| ||||||||    
T  25984397 gaccttaggttaaaaattggggtatgaca 25984369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 3498203 - 3498149
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  3498203 gttatcatcaaaactcttaagggttattattgctaaacatattttgttccaacaa 3498149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 3105115 - 3105068
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3105115 gttatcatcaaaactcttaaggattattattgctaaacacattttgtt 3105068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 9751209 - 9751162
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  9751209 gttatcttcaaaactcttaagggttattattgctaaacacattttgtt 9751162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 19737944 - 19738074
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||||| | |||| |||  ||  |||||| ||||| ||||||| || |||    
T  19737944 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaattttttcactaaaaattcagagatcgatcagagtcaagtgacatgtgtcagt 19738043  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  19738044 ggggccttaggtcaaaaattggggtatgaca 19738074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 39419404 - 39419349
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  39419404 gttatcttcaaaactcttaagggttattattgttaaacacattttgttccaacaat 39419349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 50187912 - 50187783
Alignment:
Q  130 gactcggattcaaaaaggaggtattttaaaatacttctttgtcga---tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||| | ||||| ||||||||||||||||| ||  || |||   ||||||| |||||| |||  || ||||||| ||||| ||||||| || ||||    
T  50187912 gactcggaataaaaaatgaggtattttaaaatacctccctgccgaatttttttcactgaaaaatcagagattgatcagagtcaagtgacatgtgtcagtg 50187813  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||| ||||||||    
T  50187812 gggccttaggtcaaaaattggggtatgaca 50187783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 1672860 - 1672912
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  1672860 gttatcatcaaaactcttaagggttattattgctaaaca-attttgttccaaca 1672912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 1675335 - 1675387
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  1675335 gttatcatcaaaactcttaagggttattattgctaaaca-attttgttccaaca 1675387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 22175794 - 22175903
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||| || ||| ||||  |||||| || || | | |||||||||||| ||||| | || |||||| |||||||||||||||||    
T  22175794 gaggtattttaaaatacctctctgccgaatttttcttgaaatgttaaagtccgatcagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattg 22175893  T
Q  247 gagtatgaca 256  Q
    | ||||||||    
T  22175894 gggtatgaca 22175903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 22191288 - 22191341
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  22191288 gttatcatcaaaactcttaaaggttattattgttaaacaaattttgtttcaaca 22191341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 39534290 - 39534174
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||  || ||| ||||| | |||||| ||| ||| ||||||| ||||||||||| | || ||||||| ||| ||||||    
T  39534290 aaaatgaggtattttaaaatacctccctgccgaattttttactgaaaaatcagggattgatcagagtcaaatgacacgtgtcagtgggatcttgggtcaa 39534191  T
Q  241 aaattggagtatgacag 257  Q
    ||||||| |||||||||    
T  39534190 aaattggggtatgacag 39534174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 40861123 - 40861169
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40861123 gttatcatcaaaactcttaagggttattattgctaaaca-attttgtt 40861169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 55793220 - 55793294
Alignment:
Q  182 ttgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||||||||| ||||  ||||||| ||| |||| | || ||||||||||||||||||||||||| ||||||||    
T  55793220 ttgaaaagtcaaagactattcagggttaaacgacaagtgtcagtgggaccttaggtcaaaaattggggtatgaca 55793294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 4619333 - 4619220
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    ||||| || |||||||||||||| |||  | ||| |||||| |||||| |||  || |||||||||| |||||||||| || ||||| |  |||||||||    
T  4619333 aaaaatgaagtattttaaaatacgtct--gccgaattttcagtgaaaaatcagagattgatcagggttaaatgacatgtgtcagtggtattttaggtcaa 4619236  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  4619235 aaattggggtatgaca 4619220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 4619886 - 4620001
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    ||||| ||||||||||||||||| ||| || ||| |||||| |||||| |||  || |||||||||| |||  ||||| ||| |||  | ||||||| ||    
T  4619886 aaaaatgaggtattttaaaatacctctctgccgaattttcactgaaaaatcagagattgatcagggttaaacaacatgtgtttgtgatatcttaggtaaa 4619985  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  4619986 aaattggggtatgaca 4620001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 38514321 - 38514375
Alignment:
Q  257 gttatcatcaaaactcttaa-gggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  38514321 gttatcttcaaaactcttaaagggttattattgctaaacatattttgttccaaca 38514375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 17700457 - 17700404
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||| || | |||||||||||||||| |||||||| |||||    
T  17700457 gttatcatcaaaactctgaaagattattattgctaaacatattttgttccaaca 17700404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 20555062 - 20555005
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| ||||||||    
T  20555062 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20555005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 20977877 - 20977930
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||||| |||||    
T  20977877 gttatcttcaaaactctcaagggttatcattgctaaacaaattttgttccaaca 20977930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 16720727 - 16720842
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaa 241  Q
    |||| ||||||||||||||||| |   |||||| |||| | ||||| ||||  |||||||||||||  || ||| || || ||| ||  |||||||||||    
T  16720727 aaaatgaggtattttaaaataccttcctgtcgaatttttactgaaacgtcagagactgatcagggttcaacgacgtgtgtcagtcgggtcttaggtcaaa 16720826  T
Q  242 aattggagtatgacag 257  Q
    |||||| |||||||||    
T  16720827 aattggggtatgacag 16720842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 16940414 - 16940464
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||| |||||    
T  16940414 gttatcatcaaaactcttaagag---ttattgctaaacacattttgttccaaca 16940464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 15880077 - 15880111
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  15880077 agtgggaccttaggtcaaaaattggggtatgacag 15880111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 17398343 - 17398292
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||||||| |||||    
T  17398343 gttatcatcaaaact--taaggattaatattgctaaacacattttgttccaaca 17398292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 3382466 - 3382511
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||| || |||||| |||||||||||||||||| |||||||||    
T  3382466 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 3382511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 14925106 - 14924997
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||  || ||| |||| | | ||| ||||  || |||||||||| ||  |||| | || ||||||||||||||| ||||||||    
T  14925106 gaggtattttaaaatacctccctgccgaatttttactaaaacgtcagagattgatcagggttaagcgacacgtgtcagtgggaccttaggtaaaaaattg 14925007  T
Q  247 gagtatgaca 256  Q
    | ||||||||    
T  14925006 gggtatgaca 14924997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 55732240 - 55732296
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctct 316  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| ||||| |||||    
T  55732240 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacagtctct 55732296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 3389214 - 3389258
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||    
T  3389214 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 3389258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 39745442 - 39745486
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||    
T  39745442 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 39745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 9209 - 9337
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatac-ttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||||||||||| ||||||||||||| ||| ||| | |  |||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  9209 ccgactcggattcaaaaatgaggtattttaaagtaccttcataga-gatttttcattgaaaagttagggactgatcagggtcaaatgacatgcgtcagtg 9307  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
     |||||||||||||||||||| ||||||||    
T  9308 tgaccttaggtcaaaaattggggtatgaca 9337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 22631803 - 22631692
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||| ||||||| ||  || |||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  22631803 gaggtatttcaaaatacctccctggcgatttttcattgataagtcagggactgatcagggtcaaatgacatgcgtcagtgtgaccttaggtcaaaaattg 22631704  T
Q  247 gagtatgacagt 258  Q
    | ||||||||||    
T  22631703 gggtatgacagt 22631692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 21961720 - 21961607
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaa 241  Q
    |||| ||||||||||||||||| ||  |||||  |||| |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||    
T  21961720 aaaatgaggtattttaaaatacctcactgtcggatttt-attgaaaagtcagggactgatcagtgtcaaatgacatgcgttagtggaaccttaggtcaaa 21961622  T
Q  242 aattggagtatgaca 256  Q
    |||||| ||||||||    
T  21961621 aattggggtatgaca 21961607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 20058788 - 20058903
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatt-tttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||| || ||| | |||||||||||| ||||||| |||||||||| ||| |||| | || ||||||||||||||||||    
T  20058788 aaaatgaggtattttaaaatacctctctgccgaatctttcattgaaaaatcaaggattgatcagggttaaacgacacgggtcagtgggaccttaggtcaa 20058887  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  20058888 aaattggggtatgaca 20058903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 20050925 - 20051041
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatt-tttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||| || ||| | |||||||||||| ||||||| |||||||||| ||| |||| | || ||||||| ||||||||||    
T  20050925 aaaatgaggtattttaaaatacctctctgccgaatctttcattgaaaaatcaaggattgatcagggttaaacgacacgggtcagtgggaacttaggtcaa 20051024  T
Q  241 aaattggagtatgacag 257  Q
    ||||||| |||||||||    
T  20051025 aaattggggtatgacag 20051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 19483230 - 19483293
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| ||||    
T  19483230 gttatcatcaaaactcttaaggattattattgttaaacacattttgttccaacaatctccccct 19483293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 12349419 - 12349472
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  12349419 gttatcatcaaaactcttaagggttattattgctagacacattttgttccaaca 12349472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 12667472 - 12667603
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga---tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttag 224  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||   ||||||| |||||| |||  ||  |||||| ||||| ||||||| || ||    
T  12667472 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaaaatttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcag 12667571  T
Q  225 tgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||| |||||||||||||||||| ||||||||    
T  12667572 tggggccttaggtcaaaaattggggtatgaca 12667603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 19169221 - 19169104
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||| ||||||| ||| || ||| ||||||| ||||||| ||  ||||||| ||||| ||| ||| || || ||||||||||||||||||    
T  19169221 aaaatgaggtatttcaaaatacctctctgccgaatttttcactgaaaagacagagactgattagggttaaacgacgtgtgtcagtgggaccttaggtcaa 19169122  T
Q  241 aaattggagtatgacagt 258  Q
    ||||||| ||||||||||    
T  19169121 aaattggggtatgacagt 19169104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 256
Target Start/End: Complemental strand, 18436826 - 18436710
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||||| ||||||||||||||||||||| || ||| |||| |||||||||| |  | || |||||||| ||| ||   | |||||||||| |||||||||    
T  18436826 caaaaatgaggtattttaaaatacttctctgccgaatttttattgaaaagttagagcctaatcagggttaaacgatgcgtgttagtgggatcttaggtca 18436727  T
Q  240 aaaattggagtatgaca 256  Q
    |||||||| ||||||||    
T  18436726 aaaattggggtatgaca 18436710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 20636181 - 20636236
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||    
T  20636181 gttatcttcaaaactattaagggttattattgctaaacacattttgttccaacaat 20636236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 26590081 - 26590135
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  26590081 ttatcttcaaaaatcttaagggttattattgctaaacacattttgttccaacaat 26590135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 19065749 - 19065696
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  19065749 gttatcttcaaaactcttaagggttattattgctaaacaaattttgttccaaca 19065696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 28702822 - 28702953
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga---tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttag 224  Q
    |||| ||||| ||||||| ||||||||||||||||| ||  || |||   ||||||| |||||| |||  ||  |||||| ||||| ||||||| || ||    
T  28702822 ccgaatcggaatcaaaaatgaggtattttaaaatacctccctgccgaaaatttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcag 28702921  T
Q  225 tgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||| |||||||||||||||||| ||||||||    
T  28702922 tggggccttaggtcaaaaattggggtatgaca 28702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 17316247 - 17316194
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||| |||||| |||||||||| |||||    
T  17316247 gttatcatcaaaactcttaaggattattatggctaaatacattttgttccaaca 17316194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 22779096 - 22779205
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||| || ||| |||||| |||||| |||  ||  |||||| ||||| ||||| | || |||||| | |||||||||||||||    
T  22779096 gaggtattttaaaatacctctctgccgaattttcactgaaaaatcagagatcgatcagagtcaagtgacacgtgtcagtggggcattaggtcaaaaattg 22779195  T
Q  247 gagtatgaca 256  Q
    | ||||||||    
T  22779196 gggtatgaca 22779205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 18961005 - 18961064
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacagt 258  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| ||||||||||    
T  18961005 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacagt 18961064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 33351639 - 33351585
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||| || ||||||    
T  33351639 gttatcatcaaaattcttgaggattattattgctaaacacattttattccaacaa 33351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 1549239 - 1549202
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||||||||||||||||||||||||| |||||||||    
T  1549239 gttagtgggaccttaggtcaaaaattggggtatgacag 1549202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 15666221 - 15666330
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||| ||||| || ||| ||| |||| | | ||| ||||  || |||||||||| ||  |||| | ||||||||| |||||||||||||||||    
T  15666221 gaggtattttacaatacctcattgccgaatttttactaaaacgtcagagattgatcagggttaagcgacacgtgttagtgggcccttaggtcaaaaattg 15666320  T
Q  247 gagtatgaca 256  Q
    | ||||||||    
T  15666321 gggtatgaca 15666330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 10985083 - 10985142
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacagt 258  Q
    |||||| ||||| ||||||| |||||||||  ||||||||||||||||| |||| |||||    
T  10985083 gatcagagtcaagtgacatgtgttagtggggtcttaggtcaaaaattggggtattacagt 10985142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 19713797 - 19713680
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtc 238  Q
    ||||| ||||||||||||||||| ||  || |||  ||||| | |||||| |||  ||  |||||| ||| | ||||||| || |||||| |||||||||    
T  19713797 aaaaatgaggtattttaaaatacctccctgccgaatttttttactgaaaaatcagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtc 19713698  T
Q  239 aaaaattggagtatgaca 256  Q
    ||||||||| ||||||||    
T  19713697 aaaaattggggtatgaca 19713680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 20452666 - 20452724
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||| ||||| ||||||| || |||||  |||||||||||||||||| |||||||||    
T  20452666 gatcagagtcaagtgacatgtgtcagtggagccttaggtcaaaaattggggtatgacag 20452724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 24143598 - 24143632
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  24143598 agtgggaccttaggtcaaaaattggggtatgacag 24143632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 12391109 - 12391056
Alignment:
Q  204 gggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||| ||| |||||| |||||||| | ||||||||||||||||| |||||||||    
T  12391109 gggttaaaggacatgtgttagtggtatcttaggtcaaaaattggggtatgacag 12391056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 16825644 - 16825681
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacagtta 260  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  16825644 agtgggaccttaggtcaaaatttggggtatgacagtta 16825681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 16877668 - 16877728
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||||||||||| |||||||||||| | ||   |||||||||||||| |||||||||| ||||    
T  16877668 gttatcatcaaaattcttaagggttaatgtt---aaacacattttgttccaacaatctccccct 16877728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 19719880 - 19719835
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||| || |||||| |||||||||||||||||| |||||||||    
T  19719880 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 19719835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 24150088 - 24150121
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||||||||||||| ||||||||    
T  24150088 agtgggaccttaggtcaaaaattggggtatgaca 24150121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 12423677 - 12423728
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||| |   ||||| |||||||||||||||| ||||||    
T  12423677 gttatcatcaaaactcttaagag---ttatttctaaacacattttgttccaacaa 12423728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 20459468 - 20459524
Alignment:
Q  200 atcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||| ||||| ||||||| || | |||| |||||||||||||||||| ||||||||    
T  20459468 atcagagtcaagtgacatgtgtcactggggccttaggtcaaaaattggggtatgaca 20459524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 22388085 - 22388117
Alignment:
Q  279 gttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||||||| ||||||    
T  22388085 gttattattgctaaacacattttgttccaacaa 22388117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 22764828 - 22764888
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaa 188  Q
    |||||||| | ||||||  ||||||||||||||||| ||| || ||| |||||||||||||    
T  22764828 ccgactcgaaatcaaaattgaggtattttaaaatacctctctgccgaattttcattgaaaa 22764888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 26896511 - 26896467
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||    
T  26896511 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 26896467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 24487866 - 24487981
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttc-attgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||  || ||||||||  |||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||    
T  24487866 aaaatgaggtattttaaaatacctcactgccgatttttttattgaaaagtcagggactgattagggtcaaatgacatgcgtcagtgggaccttaggtcaa 24487965  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  24487966 aaattggggtatgaca 24487981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 6030961 - 6030847
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaa 241  Q
    |||| ||||||||||||||||| ||  || ||| ||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  6030961 aaaatgaggtattttaaaatacctccctgccgaattt-cattgaaaaatcagggactgatcagggtcaaatgacatgcgtcagtgggaccttaggtcaaa 6030863  T
Q  242 aattggagtatgacag 257  Q
    |||||| ||| |||||    
T  6030862 aattggggtaagacag 6030847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 22663596 - 22663654
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  22663596 gttatcatcaaaactcttaagggttattattgctaaacacattttgttcccacaatctc 22663654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 22162922 - 22163052
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  22162922 ccgactcggaatcaaaaatgaggtattttaaaatacctccatgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 22163021  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  22163022 gggcccttaggtcaaaaattggggtatgaca 22163052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 6408164 - 6408218
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  6408164 gttatcatcaaaactcttaagggttatttttgctaaacacattttgttccaacaa 6408218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 43774332 - 43774386
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43774332 gttatcttcaaaactcttaagggttattattgctaaacacattttgttccaacaa 43774386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 45293055 - 45293109
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  45293055 gttatcatcaaaactcttaagggttattattgctaaacaaattttgttccaacaa 45293109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 14989163 - 14989110
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  14989163 gttatcatcaaaactcttaagggttattattgctaaacacattttattccaaca 14989110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 22674243 - 22674296
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  22674243 gttatcatcaaaactcttaagggttattattgataaacacattttgttccaaca 22674296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 14891799 - 14891927
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    ||||||||||  |||||| ||||||||||||||||| ||  || ||| |||| | |||||| |||  ||  |||||| ||||| ||||||| || |||||    
T  14891799 ccgactcggagccaaaaatgaggtattttaaaatacctccctgccgaatttttactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtgg 14891898  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    | |||||||||||||||||| ||||||||    
T  14891899 ggccttaggtcaaaaattggggtatgaca 14891927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 1745600 - 1745655
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  1745600 gttatcatcaaaactcttaaggattattattgctaaacatattttgttccaacaat 1745655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 18151365 - 18151315
Alignment:
Q  259 tatcatcaaaactcttaagggttattattgctaaacacattttgtttcaac 309  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  18151365 tatcatcaaaactcttaagagttattattgctaaacacattttgttccaac 18151315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 22156921 - 22157044
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||      |||||||| |||  ||  |||||| ||||| ||||||| ||||||||    
T  22156921 ccgactcggaatcaaaaatgaggtattttaaaatacctccatgccga------attgaaaaatcagagatcgatcagagtcaagtgacatgtgttagtgg 22157014  T
Q  228 gaccttaggtcaaaaattggagtatgacag 257  Q
    | |||||||||||||||||| |||||||||    
T  22157015 gcccttaggtcaaaaattggggtatgacag 22157044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 20733276 - 20733159
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||||| ||||||||||||||||| ||| || ||| |||||| |||||| |||  ||  |||||| ||||| ||||| | || | |||| ||||||||||    
T  20733276 caaaaatgaggtattttaaaatacctctctgccgaattttcactgaaaaatcagagatcgatcagagtcaagtgacacgtgtcaatggggccttaggtca 20733177  T
Q  240 aaaattggagtatgacag 257  Q
    |||||||| |||||||||    
T  20733176 aaaattggggtatgacag 20733159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 21301462 - 21301515
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||| |||||    
T  21301462 gttatcatcaaaactcttaagggttattattgttaaacatattttgttccaaca 21301515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 43640238 - 43640291
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  43640238 gttatcatcaaaactcttaaggattattattgctaaacatattttgttccaaca 43640291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 45567567 - 45567514
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  45567567 gttatcttcaaaactcttaagggttattattgctaaacgcattttgttccaaca 45567514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 33559950 - 33559898
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  33559950 ttatcttcaaaactcttaagggttattattgctaaacatattttgttccaaca 33559898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 21288843 - 21288906
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||||| |||||||||| ||||    
T  21288843 gttatcatcaaaactcttaaaggttattattgttaaacgtattttgttccaacaatctccccct 21288906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 15061271 - 15061401
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaag-tcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| | ||||| ||||||||||||||||| ||  || ||| ||||||||||||||  |||  ||  |||||| || || ||||| | || |||    
T  15061271 ccgactcggaataaaaaatgaggtattttaaaatacctccctgccgaatttttcattgaaaaaatcagagatcgatcagagttaagtgacacgtgtcagt 15061370  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  15061371 ggggccttaggtcaaaaattggggtatgaca 15061401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 20725314 - 20725196
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||||| ||||||||||||||||| ||| ||  || |||||| |||||| |||  ||  |||||| ||||| ||||| | |||||| || |||||||| |    
T  20725314 caaaaatgaggtattttaaaatacctctctgctgaattttcactgaaaaatcagagatcgatcagagtcaagtgacacgtgttagtcgggccttaggtaa 20725215  T
Q  240 aaaattggagtatgacagt 258  Q
    |||||| | ||||||||||    
T  20725214 aaaatttgggtatgacagt 20725196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 20738212 - 20738094
Alignment:
Q  140 caaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||||| ||||||||||||||||| ||| ||  || |||||| |||||| |||  ||  |||||| ||||| ||||| | |||||| || |||||||| |    
T  20738212 caaaaatgaggtattttaaaatacctctctgctgaattttcactgaaaaatcagagatcgatcagagtcaagtgacacgtgttagtcgggccttaggtaa 20738113  T
Q  240 aaaattggagtatgacagt 258  Q
    |||||| | ||||||||||    
T  20738112 aaaatttgggtatgacagt 20738094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15335748 - 15335688
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| |||||||||| ||||    
T  15335748 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaatctccccct 15335688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15424813 - 15424753
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| |||||||||| ||||    
T  15424813 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaatctccccct 15424753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15516117 - 15516057
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| |||||||||| ||||    
T  15516117 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaatctccccct 15516057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 24655278 - 24655366
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgaca 216  Q
    |||||||||||||||||| ||| |||||| |||||| ||| || ||| ||||||| ||||||| || |||||||||||| ||||| ||||    
T  24655278 ccgactcggattcaaaaatgag-tatttttaaatacctctctgccgaatttttcactgaaaagacagggactgatcaggatcaaacgaca 24655366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 40845076 - 40845026
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||| |||||||||   ||||||||||||||||| |||||    
T  40845076 gttatcatcaaaactcttgagggttatt---gctaaacacattttgttccaaca 40845026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 13385799 - 13385747
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtca 192  Q
    ||||| ||||||||||||| ||||||||||||| |||||||  ||||||||||    
T  13385799 aaaaatgaggtattttaaagtacttctttgtcgaatttttctctgaaaagtca 13385747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 21064799 - 21064685
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaa 241  Q
    |||| |||||||||| |||||| ||  |||||| |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  21064799 aaaacgaggtatttttaaatacctcactgtcgaatttt-attgaaaagtcagggactgatcagggtcaaatgacatgcgtcagtgggaccttaggtaaaa 21064701  T
Q  242 aattggagtatgacag 257  Q
    |||||| |||||||||    
T  21064700 aattggggtatgacag 21064685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 20279269 - 20279397
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||||  ||||||||||||||||| ||| || |||  ||||| |||||| |||  ||  |||||| ||||| ||||||| || |||||    
T  20279269 ccgactcggaatcaaaattgaggtattttaaaatacctctctgccgaaatttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtgg 20279368  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    | |||||||||||||||||| ||||||||    
T  20279369 ggccttaggtcaaaaattggggtatgaca 20279397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 1586692 - 1586639
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  1586692 gttatcatcaaaactcttaaaggttattattgctaaacacattttgttccaaca 1586639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 12370403 - 12370519
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    ||||| ||||||||||||||||| | |||| ||| ||||| | |||||| ||| ||| ||||||| ||||||||||| | || ||||||| ||| |||||    
T  12370403 aaaaatgaggtattttaaaatacctttttgccgaattttttactgaaaaatcagggattgatcagagtcaaatgacacgtgtcagtgggatcttgggtca 12370502  T
Q  240 aaaattggagtatgaca 256  Q
    |||||||| ||||||||    
T  12370503 aaaattggggtatgaca 12370519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 18224 - 18354
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| |||||||  | |||    
T  18224 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtctcagt 18323  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  18324 ggggccttaggtcaaaaattggggtatgaca 18354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 3277439 - 3277486
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3277439 gttatcatcaaaactcttaagggttattattgctaaacagattttgtt 3277486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 22518913 - 22519028
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||| | |||| ||||||| | |||| |||  || |||||||||| ||| |||| | || ||||||||||||||||||    
T  22518913 aaaacgaggtattttaaaatacctctctatcgagtttttcacttaaaaatcatagattgatcagggttaaacgacacgtgtcagtgggaccttaggtcaa 22519012  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  22519013 aaattggggtatgaca 22519028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 31967702 - 31967647
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  31967702 gttatcatcaaaactcttaaggattattattgttaaacacattttgttccaacaat 31967647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 14581902 - 14581955
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  14581902 gttatcatcaaaactcttaaggattattattgctaaacatattttgttccaaca 14581955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 22785428 - 22785384
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacatttt 301  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  22785428 gttatcatcaaaactcttaaggattattattgctaaacacatttt 22785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 40332530 - 40332582
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  40332530 ttatcatcaaaactcttaaggattattattgctaaacatattttgttccaaca 40332582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 36735463 - 36735333
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||| | |||||| |||  ||  |||||| ||| | ||||||| || |||    
T  36735463 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaatttttttactgaaaaatcagagatggatcagagtcgagtgacatgtgtcagt 36735364  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  36735363 ggggccttaggtcaaaaattggggtatgaca 36735333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 22775964 - 22775910
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| || ||||||    
T  22775964 gttatcatcaaaactcttaaggattattattgccaaacacattttattccaacaa 22775910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 22781342 - 22781288
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| || ||||||    
T  22781342 gttatcatcaaaactcttaaggattattattgccaaacacattttattccaacaa 22781288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 44840872 - 44840925
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||||| |||||    
T  44840872 gttatcatcaaaactcttaaggactattattgctaaacatattttgttccaaca 44840925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 45498926 - 45499040
Alignment:
Q  142 aaaaggaggtattttaaaata-cttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| |||||||||||||||| |||| | | ||| |||||| ||||| || |  ||||||||||||| ||| ||| || || ||||||  ||||||||||    
T  45498926 aaaatgaggtattttaaaatatcttcct-gccgaattttcactgaaacgttagagactgatcagggttaaacgacgtgtgtcagtggggtcttaggtcaa 45499024  T
Q  241 aaattggagtatgaca 256  Q
    ||||||||||||||||    
T  45499025 aaattggagtatgaca 45499040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 28550578 - 28550525
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||| ||||||||||||||||| ||||||||| |||||| |||||||| |||||    
T  28550578 gttaacatcaaaactcttaaggattattattgttaaacaaattttgttccaaca 28550525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 28711366 - 28711306
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| |||||||||| ||||    
T  28711366 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaatctccccct 28711306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 34321555 - 34321503
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    ||||||||||||||||||||||||   ||||| ||||||||||||||| |||||||    
T  34321555 gttatcatcaaaactcttaagggt---tattgttaaacacattttgttccaacaat 34321503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 33074690 - 33074741
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||| |||||||||||||||||||||   |||||||||||||||||| ||||||    
T  33074690 gttattatcaaaactcttaagggttat---tgctaaacacattttgttccaacaa 33074741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 18500343 - 18500225
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtc 238  Q
    ||||| ||||||||||||||||| ||  || |||  ||||| | |||||| |||  ||  |||||| ||||| ||||||| || |||||| |||||| ||    
T  18500343 aaaaatgaggtattttaaaatacctccctgccgaatttttttactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtggggccttagatc 18500244  T
Q  239 aaaaattggagtatgacag 257  Q
    ||||||||| |||||||||    
T  18500243 aaaaattggggtatgacag 18500225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 11873814 - 11873682
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga---tttttcattgaaaag-tcaaggactgatcagggtcaaatgacatgcgtta 223  Q
    |||||||||| | ||||| ||||||||||||||||| ||  ||||||   ||||| | ||||||  |||  ||  |||||| ||||| ||||||| || |    
T  11873814 ccgactcggaatgaaaaatgaggtattttaaaatacctccctgtcgaattttttttactgaaaaaatcagagatcgatcagagtcaagtgacatgtgtca 11873715  T
Q  224 gtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||  ||||||||||||||||| ||||||||    
T  11873714 gtggggtcttaggtcaaaaattggggtatgaca 11873682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 45489267 - 45489396
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgat-ttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| |||||| | |||||||| ||||||| ||| || |||  |||||| ||||||||    ||| || |||||| ||||||| || ||  |||    
T  45489267 ccgactcggaatcaaaatg-aggtatttcaaaatacctctctgccgaaattttcactgaaaagttggagaccgaacagggttaaatgacgtgtgtcggtg 45489365  T
Q  227 ggaccttaggtcaaaaattggagtatgacag 257  Q
     |||||||||||||||||||| |||||||||    
T  45489366 tgaccttaggtcaaaaattggggtatgacag 45489396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 38084476 - 38084533
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||| | ||||||| || |||||| |||||||||||||||||| ||||||||    
T  38084476 gatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 38084533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 2584 - 2471
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaa 241  Q
    |||| |||||||||| |||||| ||  |||||| |||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  2584 aaaacgaggtatttttaaatacctcactgtcgaatttt-attaaaaagtcagggactgatcagggtcaaatgacatgcgtcagtgggaccttaggtcaaa 2486  T
Q  242 aattggagtatgaca 256  Q
    |||||| ||||||||    
T  2485 aattggggtatgaca 2471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 5003 - 4940
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  5003 gttatcatcaaaactcttaagggttattattgctaaacaaattttgttccaacaatctctccct 4940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 6793 - 6731
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6793 ttatcatcaaaactcttaagggttattattgctaaacacattttgttccaacaatctccccct 6731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 17429 - 17371
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17429 gttatcatcaaaactcttaaggattattattgctaaacacattttgtttcaacaatctc 17371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 29138096 - 29138042
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29138096 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 29138042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 21660672 - 21660735
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  21660672 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaacaatctccccct 21660735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 30115578 - 30115524
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30115578 gttatcatcaaaactcttaaggattattattgctaaacacattttgtttcaacaa 30115524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 40015005 - 40014876
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || || |||||||| |||||| |||  ||  |||||| ||||| ||||||| || ||||    
T  40015005 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgcatttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtg 40014906  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||||| |||||||||||| ||||||||    
T  40014905 ggaccttaagtcaaaaattggggtatgaca 40014876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 9089362 - 9089417
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  9089362 gttatcatcaaaactcttaagggttatttttgctaaacacattttgttccaacaat 9089417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 20099585 - 20099715
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||| ||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| ||||||    
T  20099585 ccgactcggaatcaaaaatgagttattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgttagt 20099684  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  20099685 ggggccttaggtcaaaaattggggtatgaca 20099715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 37048472 - 37048343
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| | ||||| ||||||||||||||||| ||| || ||| |||||| |||||| |||  ||  |||||| ||||| ||||| | || |||||    
T  37048472 ccgactcggaataaaaaatgaggtattttaaaatacctctctgccgaattttcactgaaaaatcagagatcgatcagagtcaagtgacacgtgtcagtgg 37048373  T
Q  228 gaccttaggtcaaaaattggagtatgacag 257  Q
    || ||||||||||||||| | |||||||||    
T  37048372 gatcttaggtcaaaaatttgggtatgacag 37048343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 36448379 - 36448249
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| |||||||  |||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  36448379 ccgactcggaatcaaaaataaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 36448280  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| |||||||||||||||||| ||||||||    
T  36448279 ggggccttaggtcaaaaattggggtatgaca 36448249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 256
Target Start/End: Complemental strand, 22704612 - 22704486
Alignment:
Q  130 gactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtggga 229  Q
    ||||||||  |||||| ||||||||||||||||| ||| |||||| |||||| ||||||||||  |||||||||||| |||| | | |  |   || ||     
T  22704612 gactcggaaccaaaaatgaggtattttaaaatacctctctgtcgaattttcactgaaaagtcagagactgatcagggccaaacggcgtatgaatgtaggg 22704513  T
Q  230 ccttaggtcaaaaattggagtatgaca 256  Q
     ||||||||||||||||||||||||||    
T  22704512 tcttaggtcaaaaattggagtatgaca 22704486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 15956916 - 15957047
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga---tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttag 224  Q
    |||||||||| ||||||| | ||||||||||||||| ||  || |||   ||||||| |||||| |||  ||  |||||| ||||| ||||||| || ||    
T  15956916 ccgactcggaatcaaaaatggggtattttaaaatacctccctgccgaatttttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcag 15957015  T
Q  225 tgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| ||||||||||||||||||| ||||||||    
T  15957016 tggaaccttaggtcaaaaattggggtatgaca 15957047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 20092688 - 20092819
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||| | | ||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  20092688 ccgactcgaaataaaaaatgaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 20092787  T
Q  226 gggaccttaggtcaaaaattggagtatgacag 257  Q
    ||| |||||||||||||||||| |||||||||    
T  20092788 ggggccttaggtcaaaaattggggtatgacag 20092819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 28464032 - 28463980
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  28464032 ttatcatcaaaactcttaaggattatttttgctaaacacattttgttccaaca 28463980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 36454757 - 36454626
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||||| ||||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| ||  ||    
T  36454757 ccgactcggaatcaaaaatgaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtccgt 36454658  T
Q  226 gggaccttaggtcaaaaattggagtatgacag 257  Q
    | | |||||||||||||||||| |||||||||    
T  36454657 gaggccttaggtcaaaaattggggtatgacag 36454626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 35985924 - 35985869
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||    
T  35985924 gttatcatcaaaactcttaaggattattattgttaaacatattttgttccaacaat 35985869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 32161246 - 32161300
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  32161246 gttatcttcaaaactcttaggggttaatattgctaaacacattttgttccaacaa 32161300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 35931699 - 35931645
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||| |||||||||||| | |||||||||| ||||||    
T  35931699 gttatcatcaaaactcttaaggattattattgctagatacattttgttccaacaa 35931645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 3245126 - 3245072
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||| ||||||||||| || |||||||||| |||||||    
T  3245126 gttatcatcaaaactcttaaggattattattgct-aatacattttgttccaacaat 3245072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 5430310 - 5430370
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| |||||||||| ||||    
T  5430310 gttatcatcaaaactcttaaggg---ttaatgttaaacacattttgttccaacaatctccccct 5430370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 14086243 - 14086187
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctct 316  Q
    ||||||||||||||||||||||   |||| || ||||||||||||||| |||||||||||    
T  14086243 gttatcatcaaaactcttaagg---attagtgttaaacacattttgttccaacaatctct 14086187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 23378237 - 23378366
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| |||||||  ||||||||||||||||| ||  || ||| |||| | || ||| |||  ||  |||||| ||||| ||||||| || ||||    
T  23378237 ccgactcggaatcaaaaaatgaggtattttaaaatacctccctgccgaatttttactggaaaatcagagatcgatcagagtcaagtgacatgtgtcagtg 23378336  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||  ||||||||    
T  23378337 gggccttaggtcaaaaattgaggtatgaca 23378366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 10849219 - 10849270
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||| || |||||||||||||||| |||||||| |||||    
T  10849219 ttatcatcaaaactctta-ggattattattgctaaacatattttgttccaaca 10849270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 25929864 - 25929813
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||| |||||||||||||||| |||||||||||||||||||||| || |||||    
T  25929864 ttattatcaaaactcttaagg-ttattattgctaaacacattttcttccaaca 25929813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 25677874 - 25677929
Alignment:
Q  202 cagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||| |||||||||| ||  ||| |||||||||||||||||||| |||||||||    
T  25677874 cagggttaaatgacatgtgtcggtgtgaccttaggtcaaaaattggggtatgacag 25677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 26553298 - 26553333
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacagt 258  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26553298 agtgggaccttaggtcaaaaattggggtatgacagt 26553333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 29901303 - 29901228
Alignment:
Q  182 ttgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||||||||| ||||  ||||| | ||| ||||   || ||||||||||||||||||||||||| |||||||||    
T  29901303 ttgaaaagtcaaagactattcaggattaaacgacaactgtcagtgggaccttaggtcaaaaattggggtatgacag 29901228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 20639871 - 20639929
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||| ||| | ||||||| || |||||| |||||||||||||||||| |||||||||    
T  20639871 gatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 20639929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 21696105 - 21696071
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  21696105 agtgggaccttaggtcaaaaattggggtatgacag 21696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 21688186 - 21688153
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||||||||||||| ||||||||    
T  21688186 agtgggaccttaggtcaaaaattggggtatgaca 21688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 25526232 - 25526187
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||| || |||||| |||||||||||||||||| |||||||||    
T  25526232 tgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 25526187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 30743461 - 30743521
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||||||| | ||   | |||||||||||| |||||||||| ||||    
T  30743461 gttatcatcaaaactcttaagggttaatgtt---agacacattttgttacaacaatctccccct 30743521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 36371318 - 36371355
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  36371318 gttagtgggaccttaggtcaaaatttggggtatgacag 36371355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 36385246 - 36385283
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  36385246 gttagtgggaccttaggtcaaaatttggggtatgacag 36385283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 36995981 - 36996018
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  36995981 gttagtgggaccttaggtcaaaatttggggtatgacag 36996018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 37009919 - 37009956
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  37009919 gttagtgggaccttaggtcaaaatttggggtatgacag 37009956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 42244146 - 42244196
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||||||||    || ||||||||||||||| ||||||    
T  42244146 gttatcatcaaaactcttaagggtta----tgttaaacacattttgttccaacaa 42244196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 23577474 - 23577506
Alignment:
Q  225 tgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||||||||    
T  23577474 tgggaccttaggtcaaaaattggggtatgacag 23577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 31118308 - 31118359
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||| |||||   ||| || ||||||||||||||||||||||    
T  31118308 gttatcatcaaaactctcaaggg---ttaatgttaaacacattttgtttcaacaa 31118359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 23712 - 23583
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| | ||||| ||||||||||||||||| ||  |||||| |||||||||||||| |||  ||  |||||| ||||| ||||||| || ||||    
T  23712 ccgactcggaataaaaaatgaggtattttaaaatacctccctgtcgaatttttcattgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtg 23613  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||| ||||||||    
T  23612 gggccttaggtcaaaaattggggtatgaca 23583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 20045 - 19982
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  20045 gttatcttcaaaactcttaagggttattattgctaaacacattttgttccaacaatctccccct 19982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 34468 - 34410
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  34468 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaacaatctc 34410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 25314 - 25261
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  25314 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaaca 25261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 257
Target Start/End: Complemental strand, 15683266 - 15683151
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    ||||| |||||||||||||||||||||||||||| ||||||| | ||| || |  ||||||||||||| ||| |||  | || |||||||||||||||||    
T  15683266 aaaaatgaggtattttaaaatacttctttgtcgaatttttcactaaaatgtga--gactgatcagggttaaacgacgcgtgtcagtgggaccttaggtca 15683169  T
Q  240 aaaattggagtatgacag 257  Q
    |||||||| |||||||||    
T  15683168 aaaattggggtatgacag 15683151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 19338969 - 19338915
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  19338969 gttatcatcaaaactcttaagggttattattgctaaacaaattttgttccaacaa 19338915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 5826416 - 5826469
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  5826416 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaaca 5826469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 14425872 - 14425925
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  14425872 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaaca 14425925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 24794448 - 24794393
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaat 312  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||    
T  24794448 gttatcatcaaaactcttaaggattattattgctaaacatattttgttccaacaat 24794393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 43906228 - 43906101
Alignment:
Q  128 ccgactcggattcaaaaaggaggtatttt-aaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| ||||||| |||||||||| ||||||| || ||| ||| |||| | |||||| |||  ||  ||||||| |||| ||||||| || ||||    
T  43906228 ccgactcggaatcaaaaatgaggtatttttaaaatacctccttgccgaatttttactgaaaaatcagagatcgatcaggatcaagtgacatgtgtcagtg 43906129  T
Q  227 ggaccttaggtcaaaaattggagtatga 254  Q
    || |||||||||||||||||| ||||||    
T  43906128 gggccttaggtcaaaaattggggtatga 43906101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 27872146 - 27872199
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  27872146 gttatcatcaaaactcttaaggattattattgctaaacatattttgttccaaca 27872199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 8183398 - 8183450
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  8183398 gttatcatcaaaactcttaatg-ttattattgctaaacacattttgttccaaca 8183450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 21381160 - 21381113
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||    
T  21381160 gttatcatcaaaactcttaagaattattattgctaaacaaattttgtt 21381113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 32264432 - 32264385
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtt 304  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||||    
T  32264432 gttatcatcaaaactcttaatgattattattgctaaacatattttgtt 32264385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 48805569 - 48805522
Alignment:
Q  264 tcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    ||||||||||||||||||||||||| |||||||||||| || ||||||    
T  48805569 tcaaaactcttaagggttattattgataaacacattttattccaacaa 48805522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 34132830 - 34132888
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| |||||||||    
T  34132830 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacag 34132888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 15767136 - 15767173
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||||||||||||||||||||||||| |||||||||    
T  15767136 gttagtgggaccttaggtcaaaaattggggtatgacag 15767173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 332099 - 332154
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||| ||||| ||   |||||||||||||| ||||||||||    
T  332099 gttatcatcaaaactcttaaggtttattgtt---aaacacattttgttccaacaatctc 332154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 1858501 - 1858632
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttag 224  Q
    |||||||||| |||||||  ||||||||||||||||| ||  || |||  ||||| | |||||| |||  || ||||||  ||| | ||||||| || ||    
T  1858501 ccgactcggaatcaaaaaatgaggtattttaaaatacctccctgccgaatttttttactgaaaaatcagagattgatcatagtcgagtgacatgtgtcag 1858600  T
Q  225 tgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||| |||||||||||||||||| ||||||||    
T  1858601 tggggccttaggtcaaaaattggggtatgaca 1858632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 8913403 - 8913523
Alignment:
Q  137 attcaaaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttag 235  Q
    ||||||||| ||||||||||||||||| ||| || || |||||||| |||||||  | ||| |||||||| ||||| ||||   |   || ||| |||||    
T  8913403 attcaaaaatgaggtattttaaaatacctctctgccgaatttttcactgaaaagatagggattgatcaggatcaaacgacacatgaatgtaggatcttag 8913502  T
Q  236 gtcaaaaattggagtatgaca 256  Q
    |||||||||||| ||||||||    
T  8913503 gtcaaaaattggggtatgaca 8913523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 1293343 - 1293386
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacatttt 301  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||    
T  1293343 ttatcatcaaaactcttaagaattattattgttaaacacatttt 1293386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 13270908 - 13270954
Alignment:
Q  212 tgacatgcgttagtgggaccttaggtcaaaaattggagtatgacagt 258  Q
    ||||||| || |||||| ||||||||||||||||||| |||||||||    
T  13270908 tgacatgtgtcagtggggccttaggtcaaaaattggaatatgacagt 13270954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 42631291 - 42631325
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  42631291 agtgggaccttaggtcaaaaattggggtatgacag 42631325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 16388564 - 16388601
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  16388564 gttagtgggaccttaggtcaaaatttggggtatgacag 16388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 2265240 - 2265185
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    ||||||||||||||| |||||||   |||| | ||||||||||||||| ||||||||||    
T  2265240 gttatcatcaaaacttttaaggg---ttatcgttaaacacattttgttccaacaatctc 2265185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 16402675 - 16402711
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  16402675 gttagtgggaccttaggtcaaaatttggggtatgaca 16402711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 17016388 - 17016420
Alignment:
Q  225 tgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||| |||||||||    
T  17016388 tgggaccttaggtcaaaaattggggtatgacag 17016420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 48236646 - 48236591
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    ||||||| |||||||||||||||||| | ||   ||||||||||||||||| |||||||    
T  48236646 gttatcagcaaaactcttaagggttaatgtt---aaacacattttgtttcatcaatctc 48236591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 2384 - 2321
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||    
T  2384 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaataatctccccct 2321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 9113 - 9228
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    ||||| ||||||||||||||||| ||  || ||| |||| |||||||| |||  ||  |||||| ||||| ||||||| || |||| | |||||||||||    
T  9113 aaaaatgaggtattttaaaatacctccctgccgaatttttattgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtgaggccttaggtcaa 9212  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  9213 aaattggggtatgaca 9228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 10017 - 10071
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  10017 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaacaa 10071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 11848 - 11906
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11848 gttatcttcaaaactcttaagggttatttttgctaaacacattttgttccaacaatctc 11906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 1437 - 1384
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  1437 gttatcatcaaaactcttaaggattattattgctaaacacattttgttccaaca 1384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 87258 - 87205
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  87258 gttatcatcaaaactcttaagggttattattgctaaacatattttgttccaaca 87205  T

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Target: scaffold0035 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 98833 - 98780
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  98833 gttatcatcaaaactcttaacggttattattgctaaacacattttgttccaaca 98780  T

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Target: scaffold0032 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 29068 - 29181
Alignment:
Q  147 gaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaatt 245  Q
    ||||||||| ||||||| ||| || ||| ||||||| |||||| |||  || |||||||||| ||| |||  | || |||||||||||||||||||||||    
T  29068 gaggtatttcaaaatacctctctgccgaatttttcactgaaaaatcagagattgatcagggttaaacgacgcgtgtcagtgggaccttaggtcaaaaatt 29167  T
Q  246 ggagtatgacagtt 259  Q
    ||||||||||||||    
T  29168 ggagtatgacagtt 29181  T

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Target: scaffold0378 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 885 - 769
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||  || ||| |||||||||||||| |||  || |||||||||| ||| |||  | || ||||||||||||||||||    
T  885 aaaatgaggtattttaaaatacctccctgccgaatttttcattgaaaaatcagagattgatcagggttaaacgacgcgtgtcagtgggaccttaggtcaa 786  T
Q  241 aaattggagtatgacag 257  Q
    ||||||| |||||||||    
T  785 aaattggggtatgacag 769  T

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Target: scaffold0378; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 3451 - 3336
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||  ||||| |||||| |||||||||||||  |  |||||| ||||||  ||  | || ||||||||||||||||||    
T  3451 aaaatgaggtattttaaaatacctccctgtcggattttttattgaaaagtcaaatatggatcagagtcaaacaacgcgtgtcagtgggaccttaggtcaa 3352  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  3351 aaattggggtatgaca 3336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 15931 - 15816
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcg-atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||  ||||| |||||| |||||||||||||  |  |||||| ||||||  ||  | || ||||||||||||||||||    
T  15931 aaaatgaggtattttaaaatacctccctgtcggattttttattgaaaagtcaaatatggatcagagtcaaacaacgcgtgtcagtgggaccttaggtcaa 15832  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  15831 aaattggggtatgaca 15816  T

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Target: scaffold0323 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 261
Target Start/End: Original strand, 17669 - 17789
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    ||||| ||||||||||||||||| ||| || ||| ||||||  |||| ||||  ||||||||||||||||| ||| |  | | || ||||||||||||||    
T  17669 aaaaatgaggtattttaaaatacctctctgccgaattttcaccgaaatgtcagagactgatcagggtcaaaggacgtatgattgtaggaccttaggtcaa 17768  T
Q  241 aaattggagtatgacagttat 261  Q
    ||||||| |||||||| ||||    
T  17769 aaattggggtatgacaattat 17789  T

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Target: scaffold0176 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 320
Target Start/End: Original strand, 9639 - 9699
Alignment:
Q  260 atcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||    
T  9639 atcatcaaaactcttaagagttattattgttaaacacattttgttccaacaatctccccct 9699  T

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Target: scaffold0167 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 8108 - 7980
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgg 227  Q
    |||||||||| ||||| | ||||||||||||||||| ||  || ||| |||| | |||||| |||  ||  |||||| ||||| ||||||| || |||||    
T  8108 ccgactcggaatcaaagatgaggtattttaaaatacctccctgccgaatttttactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagtgg 8009  T
Q  228 gaccttaggtcaaaaattggagtatgaca 256  Q
    | |||||||||||||||||| ||||||||    
T  8008 ggccttaggtcaaaaattggggtatgaca 7980  T

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Target: scaffold0607 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 7368 - 7431
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||  |||||||||||||||| |||||||| |||||||||| ||||    
T  7368 gttatcatcaaaactcttaagcattattattgctaaacatattttgttccaacaatctccccct 7431  T

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Target: scaffold0211 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 15245 - 15182
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||| ||||    
T  15245 gttatcttcaaaactcttaggggttaatattgctaaacacattttgttccaacaatctccccct 15182  T

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Target: scaffold0101 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 16488 - 16603
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||  || ||| |||||||||||||| |||  || |||||||||| ||| |||  | || ||||||||||||||||||    
T  16488 aaaatgaggtattttaaaatacctccctgccgaatttttcattgaaaaatcagagattgatcagggttaaacgacgcgtgtcagtgggaccttaggtcaa 16587  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  16588 aaattggggtatgaca 16603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 41215 - 41330
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    |||| ||||||||||||||||| ||| |||||| ||||||| |||||| |||  || |||||||||| ||| |||  | || ||||||| ||||||||||    
T  41215 aaaatgaggtattttaaaatacctctctgtcgaatttttcactgaaaaatcagagattgatcagggttaaacgacgcgtgtcagtgggatcttaggtcaa 41314  T
Q  241 aaattggagtatgaca 256  Q
    ||||||| ||||||||    
T  41315 aaattggggtatgaca 41330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 27724 - 27781
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||| | ||||||| || |||||| |||||||||||||||||| ||||||||    
T  27724 gatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 27781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 38029 - 38140
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||||||||| ||| |||||| ||||  |||||| || || | | || ||||||||| ||||| | || |||||| |||||||||||||||||    
T  38029 gaggtattttaaaatacctctctgtcgaatttttcttgaaatgttaaagtccgaccagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattg 38128  T
Q  247 gagtatgacagt 258  Q
    | ||||||||||    
T  38129 gggtatgacagt 38140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 44542 - 44612
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaa 211  Q
    ||||| ||||||||||||||||| ||| |||||| |||||||||||||||||| |||| |||| |||||||    
T  44542 aaaaatgaggtattttaaaatacctctctgtcgaattttcattgaaaagtcaaagactaatcaaggtcaaa 44612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 8728 - 8781
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||    
T  8728 gttatcatcaaaactcttaagggttaatattgctaatcacattttgttccaaca 8781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 325 - 377
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  325 ttatcatcaaaactcttaaggattattattgctgaacacattttgttccaaca 377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 8388 - 8440
Alignment:
Q  258 ttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  8388 ttatcatcaaaactcttaaggattattattgctgaacacattttgttccaaca 8440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 21092 - 21156
Alignment:
Q  257 gttatcatcaaaactcttaagggtta-ttattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||| ||||    
T  21092 gttatcatcaaaactcttaaggattagttattgctgaacacattttgttccaacaatctccccct 21156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 11192 - 11240
Alignment:
Q  257 gttatcatcaaaactcttaagggtta-ttattgctaaacacattttgtt 304  Q
    |||||||||||||||||||||| ||| |||||||| |||||||||||||    
T  11192 gttatcatcaaaactcttaaggattagttattgctgaacacattttgtt 11240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 256
Target Start/End: Complemental strand, 65957 - 65838
Alignment:
Q  139 tcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttagg 236  Q
    ||||||| ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||||| |||||||    
T  65957 tcaaaaatgaggtattttaaaatacctccctgccgaattttttcaatgaaaaatcagagatcgatcagagtcaagtgacatgtgtgagtggggccttagg 65858  T
Q  237 tcaaaaattggagtatgaca 256  Q
    ||||||||||| ||||||||    
T  65857 tcaaaaattggggtatgaca 65838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 315
Target Start/End: Complemental strand, 5268 - 5213
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctc 315  Q
    |||||||||||||||||||||||   ||| || ||||||||||||||| ||||||||||    
T  5268 gttatcatcaaaactcttaaggg---ttaatgataaacacattttgttccaacaatctc 5213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 4886 - 4803
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaa 210  Q
    |||||||||||||||||| ||||||||||||||| | |   || ||| ||||| |||||||||||| |||||||||||||||||    
T  4886 ccgactcggattcaaaaatgaggtattttaaaatgccttcctgccgatttttttattgaaaagtcagggactgatcagggtcaa 4803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 96839 - 96782
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| ||||||||    
T  96839 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 96782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 29919 - 29866
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||| |||||    
T  29919 gttatcttcaaaactcttaggggttaatattgctaaacacattttgttccaaca 29866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 7807 - 7864
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||||| ||||||| ||||||||| |||||||||||||||||| ||||||||    
T  7807 gatcagagtcaagtgacatgtgttagtggggccttaggtcaaaaattggggtatgaca 7864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 9329 - 9404
Alignment:
Q  182 ttgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||||||||| ||||  ||||||| ||| |||| | || ||||||| ||||||||||||||||| |||||||||    
T  9329 ttgaaaagtcaaagactattcagggttaaacgacaagtgtcagtgggaacttaggtcaaaaattggggtatgacag 9404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 256
Target Start/End: Original strand, 7591 - 7706
Alignment:
Q  141 aaaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaa 240  Q
    ||||| ||||||||||||||||| ||  || ||| |||| |||||||| |||  ||  |||||| ||||| ||||| | || |||||| |||||||||||    
T  7591 aaaaatgaggtattttaaaatacctccctgccgaatttttattgaaaaatcagagatcgatcagagtcaagtgacaagtgtcagtggggccttaggtcaa 7690  T
Q  241 aaattggagtatgaca 256  Q
    ||||| | ||||||||    
T  7691 aaattagggtatgaca 7706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 485 - 432
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||| ||||||||| || | |||||||||| |||||    
T  485 gttatcatcaaaactcttaaggattattattgttagatacattttgttccaaca 432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 22103 - 22046
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||||| ||||||| || |||||| |||||||||||||||||| ||||||||    
T  22103 gatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 22046  T

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Target: scaffold0269 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 7762 - 7822
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    |||||||||||||||||||||| ||||| ||   |||||||||||||| |||||||||| ||||    
T  7762 gttatcatcaaaactcttaaggtttattgtt---aaacacattttgttccaacaatctccccct 7822  T

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Target: scaffold0094 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 41694 - 41731
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||||||||||||||||||||||||| |||||||||    
T  41694 gttagtgggaccttaggtcaaaaattggggtatgacag 41731  T

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Target: scaffold0094; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 30732 - 30766
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  30732 agtgggaccttaggtcaaaaattggggtatgacag 30766  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 14228 - 14099
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    |||||||||| |||||||  ||||||||||||||||| ||  || ||| |||| | || ||| |||  ||  |||||| ||||| ||||||| || ||||    
T  14228 ccgactcggaatcaaaaaatgaggtattttaaaatacctccctgccgaatttttactggaaaatcagagatcgatcagagtcaagtgacatgtgtcagtg 14129  T
Q  227 ggaccttaggtcaaaaattggagtatgaca 256  Q
    || |||||||||||||||||  ||||||||    
T  14128 gggccttaggtcaaaaattgaggtatgaca 14099  T

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Target: scaffold0507 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 11035 - 11071
Alignment:
Q  220 gttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11035 gttagtgggactttaggtcaaaaattggagtatgaca 11071  T

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Target: scaffold1922 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1922
Description:

Target: scaffold1922; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 151 - 281
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagt 225  Q
    |||||||| | |||||||  |||||||||||||||| ||   | |||  ||||||| |||||| |||  ||  |||||| ||||| ||||||| || |||    
T  151 ccgactcgtaatcaaaaataaggtattttaaaatacctcccagccgaattttttcactgaaaaatcagagatcgatcagagtcaagtgacatgtgtcagt 250  T
Q  226 gggaccttaggtcaaaaattggagtatgaca 256  Q
    ||| | |||||||||||||||| ||||||||    
T  251 ggggcattaggtcaaaaattggggtatgaca 281  T

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Target: scaffold0435 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 8384 - 8439
Alignment:
Q  202 cagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgacag 257  Q
    |||||| |||||||||| ||  ||| |||||||||||||||||||| |||||||||    
T  8384 cagggttaaatgacatgtgtcggtgtgaccttaggtcaaaaattggggtatgacag 8439  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 135050 - 134988
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaatctctccct 320  Q
    ||||| |||||||||||||||| || |||||||| |||||||||| || |||||||||| ||||    
T  135050 gttatgatcaaaactcttaaggatttttattgct-aacacattttcttccaacaatctccccct 134988  T

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Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 65083 - 65030
Alignment:
Q  257 gttatcatcaaaactcttaagggttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||| ||||||| ||||| ||||||||||| ||||||||||||| ||||||    
T  65083 gttatcattaaaactcgtaaggattattattgct-aacacattttgttccaacaa 65030  T

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Target: scaffold1888 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1888
Description:

Target: scaffold1888; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 1033 - 1115
Alignment:
Q  174 atttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||||| ||||| || || | |||||||||||||| ||||| | ||  |||||| ||| ||||||||||||| ||||||||    
T  1033 atttttcactgaaatgttaaagtctgatcagggtcaagtgacacgtgtcggtgggatcttgggtcaaaaattggggtatgaca 1115  T

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Target: scaffold0815 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 4978 - 5107
Alignment:
Q  128 ccgactcggattcaaaaaggaggtattttaaaatacttctttgtcga-tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtg 226  Q
    ||||||||||   ||||| || |||||||||||||| ||| || ||| ||||||||||||| ||||  ||||||||| ||||||| | | |  |   ||     
T  4978 ccgactcggaacaaaaaatgaagtattttaaaatacctctctgccgaatttttcattgaaatgtcagagactgatcaaggtcaaaaggcgtatgaatgt- 5076  T
Q  227 ggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||| |||||||||    
T  5077 ggaccttaggtcaaaaattggggtatgacag 5107  T

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Target: scaffold0503 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 1866 - 1983
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactg--atcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||| ||||||||||||||||| ||  || ||| |||| | ||||| ||||  ||||   |||||||| |||||||  | || |||| ||||||||||||    
T  1866 aaaatgaggtattttaaaatacctccctgccgaatttttactgaaatgtcagagactcttatcagggttaaatgacgcgtgtcagtgagaccttaggtca 1965  T
Q  240 aaaattggagtatgacag 257  Q
    |||||||| |||||||||    
T  1966 aaaattggggtatgacag 1983  T

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Target: scaffold0503; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 6433 - 6550
Alignment:
Q  142 aaaaggaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactg--atcagggtcaaatgacatgcgttagtgggaccttaggtca 239  Q
    |||| ||||||||||||||||| ||  || ||| |||| | ||||| ||||  ||||   |||||||| |||||||  | || |||| ||||||||||||    
T  6433 aaaatgaggtattttaaaatacctccctgccgaatttttactgaaatgtcagagactcttatcagggttaaatgacgcgtgtcagtgagaccttaggtca 6532  T
Q  240 aaaattggagtatgacag 257  Q
    |||||||| |||||||||    
T  6533 aaaattggggtatgacag 6550  T

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Target: scaffold0068 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 17805 - 17839
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacag 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  17805 agtgggaccttaggtcaaaaattggggtatgacag 17839  T

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Target: scaffold0068; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 25724 - 25757
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||||||||||||||||||| ||||||||    
T  25724 agtgggaccttaggtcaaaaattggggtatgaca 25757  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 89808 - 89937
Alignment:
Q  128 ccgactcggattcaaaaag-gaggtattttaaaatacttctttgtcga--tttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttag 224  Q
    |||||||||| |||||||  ||||||||||||||||| ||  || |||  ||||||| |||||| |||  ||  ||| || ||||| ||||||  || ||    
T  89808 ccgactcggaatcaaaaaatgaggtattttaaaatacctccctgccgaattttttcactgaaaaatcagagatcgataagagtcaagtgacatatgtcag 89907  T
Q  225 tgggaccttaggtcaaaaattggagtatga 254  Q
    |||| |||||||||||||||||| ||||||    
T  89908 tggggccttaggtcaaaaattggggtatga 89937  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 3875 - 3765
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattg 246  Q
    ||||||||||| ||||| || ||| ||| |||| | | ||| ||||  || |||||||||| ||  ||||   ||||||||| |||||||||||||||||    
T  3875 gaggtattttacaatacctcattgccgaatttttactaaaacgtcagagattgatcagggttaagcgacacatgttagtgggcccttaggtcaaaaattg 3776  T
Q  247 gagtatgacag 257  Q
    | |||||||||    
T  3775 gggtatgacag 3765  T

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Target: scaffold1088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 310
Target Start/End: Original strand, 1 - 34
Alignment:
Q  277 gggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||||||||| |||||    
T  1 gggttattattgctaaacacattttgttccaaca 34  T

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Target: scaffold0488 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 11260 - 11212
Alignment:
Q  259 tatcatcaaaactcttaagggttattattgctaaacacattttgtttcaaca 310  Q
    |||||||||||||||||||||   ||| || |||||||||||||||||||||    
T  11260 tatcatcaaaactcttaaggg---ttaatgttaaacacattttgtttcaaca 11212  T

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Target: scaffold0150 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 38607 - 38664
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    |||||| ||| | ||||||| || |||||| |||||||||||||||||| ||||||||    
T  38607 gatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 38664  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 1456 - 1513
Alignment:
Q  199 gatcagggtcaaatgacatgcgttagtgggaccttaggtcaaaaattggagtatgaca 256  Q
    ||||||||| ||| |||| | ||||||||||| |||| ||||||||||| ||||||||    
T  1456 gatcagggttaaacgacacgtgttagtgggactttagatcaaaaattggggtatgaca 1513  T

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Target: scaffold1719 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1719
Description:

Target: scaffold1719; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 23 - 59
Alignment:
Q  223 agtgggaccttaggtcaaaaattggagtatgacagtt 259  Q
    |||||||||||||||||||| |||| |||||||||||    
T  23 agtgggaccttaggtcaaaatttggggtatgacagtt 59  T

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Target: scaffold0925 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0925
Description:

Target: scaffold0925; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 1416 - 1384
Alignment:
Q  279 gttattattgctaaacacattttgtttcaacaa 311  Q
    |||||||||||||||||||||||||| ||||||    
T  1416 gttattattgctaaacacattttgttccaacaa 1384  T

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Target: scaffold0183 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 20790 - 20679
Alignment:
Q  147 gaggtattttaaaatacttctttgtcgatttttcattgaaaagtcaaggactgatcagggtcaaatgacatgcgtta--gtgggaccttaggtcaaaaat 244  Q
    ||||||||||||||||| |   || ||| ||||  || ||||||||| ||||  ||||||| ||| |||| | || |  |||||||||||||||||||||    
T  20790 gaggtattttaaaataccttactgccgaatttttttttaaaagtcaaagactattcagggttaaacgacaagtgtcagtgtgggaccttaggtcaaaaat 20691  T
Q  245 tggagtatgaca 256  Q
    ||| ||||||||    
T  20690 tggggtatgaca 20679  T

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