View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_8 (Length: 275)
Name: NF8683_low_8
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 26007876 - 26007732
Alignment:
| Q |
1 |
catgatggagaagatccatttgcgatcccagccaatccttgacttttgtttgtatttgaaattcgatgtcatgttttgattaagacttgtgaatgtttga |
100 |
Q |
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| T |
26007876 |
catgacggagaagatccatttgcgatcccggccaatccttgatttttgtttgtatttgaaatttgatgtcatgttttgattaagacttgtgaatgtttga |
26007777 |
T |
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| Q |
101 |
gtgttttgaacaaaacttgtgttatgatttatgaatatttcacga |
145 |
Q |
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| T |
26007776 |
gtgttttgaacaaaacttgtgttctcatttatgaatatttcacga |
26007732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 44717149 - 44717030
Alignment:
| Q |
23 |
cgatcccagccaatccttgacttttgtttgtatttgaaattcgatgtcatgttttgattaagacttgtgaatgtttgagtgttttgaacaaaacttgtgt |
122 |
Q |
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| T |
44717149 |
cgatcccggccaatccttgaattttgttggtatttggaattggatgtaatgttttgattaagacttgggaatgctagagtgttttgattaagacttgtgt |
44717050 |
T |
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| Q |
123 |
tatgatttatgaatatttca |
142 |
Q |
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| T |
44717049 |
tttgatttatgaatgtttca |
44717030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 26007170 - 26007117
Alignment:
| Q |
206 |
catgtaacttattcaaaaaattatcaatccgggcaatcccactacccgctattc |
259 |
Q |
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| T |
26007170 |
catgtaacttattcaaaaaattatcaatccaggcaatcccactatccgctattc |
26007117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 30717877 - 30717803
Alignment:
| Q |
24 |
gatcccagccaatccttgacttttgtttgtatttgaaattcgatgtcatgttttgattaagacttgtgaatgttt |
98 |
Q |
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| T |
30717877 |
gatcccggccaatccttgacttgtgttggagtttggaattggatgtaatgttttgattaagacttgtgaatgttt |
30717803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 44901521 - 44901472
Alignment:
| Q |
93 |
atgtttgagtgttttgaacaaaacttgtgttatgatttatgaatatttca |
142 |
Q |
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| T |
44901521 |
atgtttgagtgttttgattaagacttgtgttttgatttatgaatgtttca |
44901472 |
T |
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