View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8683_low_9 (Length: 273)
Name: NF8683_low_9
Description: NF8683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8683_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4105781 - 4106036
Alignment:
| Q |
1 |
aacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaac |
100 |
Q |
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| T |
4105781 |
aacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaac |
4105880 |
T |
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| Q |
101 |
caaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttcctac |
200 |
Q |
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| T |
4105881 |
caaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttcctac |
4105980 |
T |
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| Q |
201 |
tgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagat |
256 |
Q |
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| T |
4105981 |
tgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagat |
4106036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4128971 - 4129208
Alignment:
| Q |
1 |
aacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacagcacaac |
100 |
Q |
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||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||| |
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| T |
4128971 |
aacaacctcgtacaagcaccgacaggatcacaagttcagctaacatcaggaggactcacgttgacaactcaacaaggtgaatccatttggacagcacaac |
4129070 |
T |
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| Q |
101 |
caaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtttcctac |
200 |
Q |
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| T |
4129071 |
caaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtttcccac |
4129170 |
T |
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| Q |
201 |
tgatacccttttgcctaatcaatcacttgagttaggtg |
238 |
Q |
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| T |
4129171 |
cgacacccttttgcctaatcaatctcttgaattaggtg |
4129208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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