View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8684_high_2 (Length: 572)
Name: NF8684_high_2
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8684_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 188 - 556
Target Start/End: Original strand, 39387731 - 39388101
Alignment:
| Q |
188 |
gacttggtgattagtaggaggcttaattagaaactgtagagtgcaccaatagtgcttagcttcagctttaatgattaatcaaagcctat--gtttctttt |
285 |
Q |
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| T |
39387731 |
gacttggtgattagtaggaggcttaattagaaactgtagagtgcatcaatagtgcttagcttcagctttaatgattaatcaaagcctatatgtttctttt |
39387830 |
T |
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| Q |
286 |
tccagattcagaacttgtaacactttgagctaccgttgcatatttcccggtagtgcgttgatgttaccttttttataggcaaatgttcggggttatttta |
385 |
Q |
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| T |
39387831 |
tccagattcagaacttgtaacactttgagctaccgttgcatatttcccggtagtgcgttgatgttaccttttttataggcaaatgttcggggttatttta |
39387930 |
T |
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| Q |
386 |
ttagggggaaatgaaatttgttagtagaaggaatcgaacctagatcctcgttcgtaatattccactagcatccctccttcgaggatgtgttgatgttact |
485 |
Q |
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| T |
39387931 |
ttagggggaaatgaaatttgttagtagaaggaatcgaacctagaccctcgttcgtaatattccactagcatccctccttcgaggatgtgttgatgttact |
39388030 |
T |
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| Q |
486 |
taaatgctttgtcgagaatagtgaatggtgtaaatttagtaacttcaataatatgttttaactcatgatgt |
556 |
Q |
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| T |
39388031 |
taaatgctttgtcgagaatagtgaatggtgtaaatttagtaacttcaataatatgttttaactcatgatgt |
39388101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 39387559 - 39387668
Alignment:
| Q |
16 |
caacatcaacttgtttctcaagttcagaagcctaagattgcttttctcttcattgcaaggaataggcttcctctggaattggtttgggatgcattcttta |
115 |
Q |
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| T |
39387559 |
caacatcaacttgtttctcaagttcagaagcctaagattgcttttcttttcattgcaaggaataggcttcctttggaattggtttgggatgcattcttta |
39387658 |
T |
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| Q |
116 |
gggtacactc |
125 |
Q |
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| T |
39387659 |
gggtacactc |
39387668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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