View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8684_high_3 (Length: 493)
Name: NF8684_high_3
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8684_high_3 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 182 - 480
Target Start/End: Complemental strand, 5532 - 5225
Alignment:
| Q |
182 |
agagtgccactgactccatggaaagatttcatagtcatagattgttcgagaattgctcctgcaaactatacatttgaaaa-tattagtat--------ca |
272 |
Q |
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| T |
5532 |
agagtgccactaactccatggaaagatgtcatagtcatagattgttcaagaattgctcctgcaaactatacatttgaaaaatattagtataactatttca |
5433 |
T |
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| Q |
273 |
aaatcaatgttggtgcaataaatcaagaaaatatactaaattcaaggaaaaaacggtatcaaatacattacattagtgctcgtgactttctccaactgta |
372 |
Q |
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| T |
5432 |
aaatcaatgttggtgcaataaatcaagaaaagatattaaattcaaggaaaaaagggtatcaaatacattacattagtgctcgtgactttctccaactgtg |
5333 |
T |
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| Q |
373 |
caaaatcctcttgagcaaaattagtgctcgtgactttcactaaacaaaagaaaaagaaaataatattgatcattttcaagactcacttctcaaacaatta |
472 |
Q |
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| T |
5332 |
caaaatcctcttgagcaaaattagtgctcgtgactttcactaaacaaaagaaaaagaaaataatactaatcattttcgagactcacttctcaaacaatta |
5233 |
T |
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| Q |
473 |
gagtatta |
480 |
Q |
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| T |
5232 |
gagtatta |
5225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 6145 - 5980
Alignment:
| Q |
18 |
taaacatgttatgt---ttattggaaaaaattataattatatttgataagaataaactcacatgccatccaacgataattgtattaaaattatttggaaa |
114 |
Q |
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| T |
6145 |
taaacatgttatgtaatttattggaaaaaattataattatatttgataagaataaactcacatgccatccaacaataattgtattaaaattatttggaga |
6046 |
T |
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| Q |
115 |
tctatttacaatcatcatgattgaagcactcatttgatttatctctactattggattaaaaacact |
180 |
Q |
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| T |
6045 |
tctatttacaatcatcatgattgaagcactcatttgatttatctctactattggattaaaaacact |
5980 |
T |
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