View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8684_high_6 (Length: 273)

Name: NF8684_high_6
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8684_high_6
NF8684_high_6
[»] chr6 (5 HSPs)
chr6 (18-273)||(1683926-1684181)
chr6 (123-273)||(1694456-1694602)
chr6 (71-139)||(1970398-1970466)
chr6 (41-90)||(1694375-1694424)
chr6 (145-173)||(1694422-1694450)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 1683926 - 1684181
Alignment:
Q  18 aatcatggttctgaaaaattatctataaattcaatgaaacttgaaaagtaaagaatagccaatccttctcaattatatgcatgtctaacatgcatattgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1683926 aatcatggttctgaaaaattatctataaattcaatgaaacttgaaaagtaaagaatagccaatccttctcaattatatgcatgtctaacatgcatattgt 1684025  T
Q  118 aaatgaaatcatctagataaaacctctaataaaatttgtaatgtcatcctaatttgaaaattgnnnnnnngaagtgccataatcagatcagactgcagtc 217  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  1684026 aaaagaaatcacctagataaaacctctaataaaatttgtaatgtcatcctaatttgaaaattgaaaaaaagaagtgccataatcagatcagactgcagtc 1684125  T
Q  218 gcaactggagatggaccacccttatcatcatctatctgattatctcccctgcacca 273  Q
     ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  1684126 acaactggagctggaccacccttatcatcatcaatctgattatctcccctgcacca 1684181  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 1694456 - 1694602
Alignment:
Q  123 aaatcatctagataaaacctctaataaaatttgtaatgtcatcctaatttgaaaattgnnnnnnngaagtgccataatcagatcagactgcagtcgcaac 222  Q
    |||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||  |       |||||||||||||||||||||||| ||||| || |    
T  1694456 aaatcacctagataaatcctctaataaaatttgtaatgtcatgctaatttgaaaaaag-aaaaaagaagtgccataatcagatcagactacagtcacagc 1694554  T
Q  223 tggagatggaccacccttatcatcatctatctgattatctcccctgcacca 273  Q
    ||||   | | ||  |||||||||| | |||||||||||||||||||||||    
T  1694555 tgga---gcatcattcttatcatcaccaatctgattatctcccctgcacca 1694602  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 1970398 - 1970466
Alignment:
Q  71 aatagccaatccttctcaattatatgcatgtctaacatgcatattgtaaatgaaatcatctagataaaa 139  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||    
T  1970398 aatagccaatccttctcaattatatgcatgtcttacatgcatattataaaagaaatcacctagataaaa 1970466  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 1694375 - 1694424
Alignment:
Q  41 tataaattcaatgaaacttgaaaagtaaagaatagccaatccttctcaat 90  Q
    |||||||||||||||||| |||||||||| |||||| ||| |||| ||||    
T  1694375 tataaattcaatgaaactggaaaagtaaaaaatagcaaattcttcgcaat 1694424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 173
Target Start/End: Original strand, 1694422 - 1694450
Alignment:
Q  145 aataaaatttgtaatgtcatcctaatttg 173  Q
    |||||||||||||||||||||||||||||    
T  1694422 aataaaatttgtaatgtcatcctaatttg 1694450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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