View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8684_high_7 (Length: 211)
Name: NF8684_high_7
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8684_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 31276138 - 31275932
Alignment:
| Q |
1 |
aacaccttattccatgagcttctttgatactgcatttggtactgccgaattttcgcagtgtgttttttgatccaatcatctcccaaaagtgtccctaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31276138 |
aacaccttattccatgagcttctttgatactgcatttggtactgccgaattttcgcagtgtgttttttgatccaatcatctcccaaaagtgtccctaatt |
31276039 |
T |
|
| Q |
101 |
cactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtccttgtaaattttggatttagcttctaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31276038 |
cactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtccttgtaaattttggatttagcttctaaatt |
31275939 |
T |
|
| Q |
201 |
gctctct |
207 |
Q |
| |
|
||||||| |
|
|
| T |
31275938 |
gctctct |
31275932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 31277977 - 31278080
Alignment:
| Q |
97 |
aattcactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtccttgtaaattttggatttagcttcta |
196 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||| || ||||||||||||||||| | ||||| ||| |||||||| ||||| || || ||||| | |
|
|
| T |
31277977 |
aattcactatctttggttttttgaaccatgtacctgcagttattcatcaagaaaacataactcaaagaaggctccttgtagattttagagttggcttcca |
31278076 |
T |
|
| Q |
197 |
aatt |
200 |
Q |
| |
|
|||| |
|
|
| T |
31278077 |
aatt |
31278080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 31286310 - 31286206
Alignment:
| Q |
104 |
tatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacatagcaca-aagcagggtccttgtaaattttggatttagcttctaaattgc |
202 |
Q |
| |
|
|||||||||| |||||| || ||||||||| | |||||| ||||||||||||| ||| |||||||| ||| ||||||||||| ||||| ||| ||| |
|
|
| T |
31286310 |
tatcttcagccttttgagcactgtacctgctgtaattcatctggaaaacatagcactgaagtagggtcctcgtagattttggatttggcttccaaactgc |
31286211 |
T |
|
| Q |
203 |
tctct |
207 |
Q |
| |
|
||||| |
|
|
| T |
31286210 |
tctct |
31286206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 31402902 - 31402865
Alignment:
| Q |
135 |
attgttcatcaagaaaacatagcacaaagcagggtcct |
172 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
31402902 |
attgttcatcaagaaaaaatagcgcaaagcagggtcct |
31402865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 26909565 - 26909366
Alignment:
| Q |
1 |
aacaccttattccatgagcttctttgatactgcatttggtactgccgaattttcgcagtgtgttttttgatccaatcatctcccaaaagtgtccctaatt |
100 |
Q |
| |
|
|||| ||| |||||||||||||||||||| | | ||| | ||||| | ||| | | |||||||| ||||||||||||| |||| |||||| ||||||| |
|
|
| T |
26909565 |
aacaacttgttccatgagcttctttgatagtttgtatggcattgccgcacttttgtactgtgttttctgatccaatcatcacccataagtgttcctaatt |
26909466 |
T |
|
| Q |
101 |
cactatcttcagctttttgaacaatgtacctgcaattgttcatcaagaaaacatagcacaaagcagggtccttgtaaattttggatttagcttctaaatt |
200 |
Q |
| |
|
|||| |||| | || ||||||||||| || | ||||||||||| |||||| | |||||||||||||| ||||||||| | ||||| ||||| ||||| |
|
|
| T |
26909465 |
cactgtctttggtcttctgaacaatgtatctcccattgttcatcataaaaacagaacacaaagcagggtctttgtaaattctagatttcgcttccaaatt |
26909366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University