View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8684_low_10 (Length: 276)
Name: NF8684_low_10
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8684_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 1094843 - 1094587
Alignment:
| Q |
11 |
tcatgatactactggtccaatgagcaatggttgtgagtataatgacaatcaaataccactattaattgtctcgttaaatctccattacccgaacgttaca |
110 |
Q |
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| T |
1094843 |
tcatgatactactgatccaatgagcaatggttgtgagtataatgacaatcaaataccactattaattgtctcgttaaatctccattacccgaacgttaca |
1094744 |
T |
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| Q |
111 |
aaaagaagaagaaaaaccaaacattcaatccatcagtctg--------gcatc--atatatatattcaatataagagaattaagagtagtagacagtgga |
200 |
Q |
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| T |
1094743 |
aaaagaagaagaaaaaccaaacattcaatccatcagtctgtgcaacttgcatcatatatatatattcaatataagagaattaagagtagtagacagtgga |
1094644 |
T |
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| Q |
201 |
ggatggaaatcagttcatcgtgttgtctattaaactatcttcctctccattgttctt |
257 |
Q |
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| T |
1094643 |
ggatggaaatcagttcatcgtgttgtctattaaactatcttcctttccattgttctt |
1094587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 1091076 - 1090976
Alignment:
| Q |
41 |
ttgtgagtataatgacaatcaaataccactattaattgtctcgttaaatctccattacccgaacgttacaaaaagaagaagaaaaaccaaacattcaatc |
140 |
Q |
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| T |
1091076 |
ttgtgagtataatgacaatcaagtaccactatt---tgtctccttaaatctccattgccagaacgttacagaaagaagaagaaaaaccaaacattcaatc |
1090980 |
T |
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| Q |
141 |
catc |
144 |
Q |
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| T |
1090979 |
catc |
1090976 |
T |
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