View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8684_low_4 (Length: 493)

Name: NF8684_low_4
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8684_low_4
NF8684_low_4
[»] scaffold0009 (2 HSPs)
scaffold0009 (182-480)||(5225-5532)
scaffold0009 (18-180)||(5980-6145)


Alignment Details
Target: scaffold0009 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 182 - 480
Target Start/End: Complemental strand, 5532 - 5225
Alignment:
Q  182 agagtgccactgactccatggaaagatttcatagtcatagattgttcgagaattgctcctgcaaactatacatttgaaaa-tattagtat--------ca 272  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||        ||    
T  5532 agagtgccactaactccatggaaagatgtcatagtcatagattgttcaagaattgctcctgcaaactatacatttgaaaaatattagtataactatttca 5433  T
Q  273 aaatcaatgttggtgcaataaatcaagaaaatatactaaattcaaggaaaaaacggtatcaaatacattacattagtgctcgtgactttctccaactgta 372  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  5432 aaatcaatgttggtgcaataaatcaagaaaagatattaaattcaaggaaaaaagggtatcaaatacattacattagtgctcgtgactttctccaactgtg 5333  T
Q  373 caaaatcctcttgagcaaaattagtgctcgtgactttcactaaacaaaagaaaaagaaaataatattgatcattttcaagactcacttctcaaacaatta 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  5332 caaaatcctcttgagcaaaattagtgctcgtgactttcactaaacaaaagaaaaagaaaataatactaatcattttcgagactcacttctcaaacaatta 5233  T
Q  473 gagtatta 480  Q
    ||||||||    
T  5232 gagtatta 5225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 6145 - 5980
Alignment:
Q  18 taaacatgttatgt---ttattggaaaaaattataattatatttgataagaataaactcacatgccatccaacgataattgtattaaaattatttggaaa 114  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  6145 taaacatgttatgtaatttattggaaaaaattataattatatttgataagaataaactcacatgccatccaacaataattgtattaaaattatttggaga 6046  T
Q  115 tctatttacaatcatcatgattgaagcactcatttgatttatctctactattggattaaaaacact 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6045 tctatttacaatcatcatgattgaagcactcatttgatttatctctactattggattaaaaacact 5980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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