View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8684_low_8 (Length: 381)
Name: NF8684_low_8
Description: NF8684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8684_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 375
Target Start/End: Complemental strand, 24760688 - 24760335
Alignment:
| Q |
22 |
ccatcccttgaaatcgcgatctgggtcgtgacataaaagattttggtgttgctgaaaccacaatgcggccgcgattagtctaaattggccacatttgatc |
121 |
Q |
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| T |
24760688 |
ccatcccttgaaatcgcgatctgggtcgtgacataaaagattttggtgttgctgaaaccacaatgtggccgcgattagtctaaattggccacatttgatc |
24760589 |
T |
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| Q |
122 |
acaattgcctacattatcagagatagcgacacaaccaccataacttaaaaccctaattgacgacggcataaagttttttaatgttgttgaaatcgcaatg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
24760588 |
acaattgcctacattatcagagatagcgacacaaccaccataacttaaaaccctaattgacgacggcataaagttttttaatgttgctgaaaccacaatg |
24760489 |
T |
|
| Q |
222 |
cggccacgattaggctacattggtcgcatttcatcacaattctccacaatatcgaagatcacggcgcaaccctcacttaaaaccctatttaaaacccgat |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24760488 |
cggccacgattaggctacattggtcgcatttcatcacaattctccacaatatcaaagatcacggcgcaaccctcacttaaaaccctatttaaaacccgat |
24760389 |
T |
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| Q |
322 |
ttgaccgcaatcattatcacaatggctatttaaaaccctgcccccaccaccaaa |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24760388 |
ttgaccgcaatcattatcacaatggctatttaaaaccctgcccccaccaccaaa |
24760335 |
T |
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